Protein Overview: SPCC1442.07c

General Information:
Name(s) found:	SPCC1442.07c [Sanger Pombe]
Description(s) found: Found 18 descriptions. SHOW ALL	ubiquitin/metalloprotease fusion protein [Sanger Pombe]
Organism:	Schizosaccharomyces pombe
Length:	282 amino acids
Gene Ontology:
Cellular Component:	nucleus [IDA] cytosol [IDA]
Biological Process:	protein sumoylation [ISS] cellular response to stress [IEP] response to DNA damage stimulus [ISS]
Molecular Function:	zinc ion binding [ISS] metallopeptidase activity [ISS]

Sequence:

Sequence:
[PDR BLAST]
[ProtParam]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELKFSCRGN VIALSFNEND TVLDAKEKLG QEIDVSPSLI KLLYKGNLSD DSHLQDVVKN  60
   61 ESKIMCLIRQ DKDIVNQAIS QLKVPDYSTN TYSLKPKKPH TTPKPASIYT FNELVVLDYP 120
  121 HKDRALRYLE RLRDDTGIKK IMDSHRWTVP LLSEMDPAEH TRHDSKTLGL NHNQGAHIEL 180
  181 RLRTDRYDGF RDYKTVKSTL IHELTHNVHG EHDSSFWELF RQLTKEADAA DLLGKPGSYV 240
  241 SDRASYTPQQ DNDDEDQKNH RRDLLLAAAE RRKQSGSKVQ KE

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

No mass spectrometry results found for this protein.

Yeast Two-Hybrid Data

The following interactions contain this protein:

NOT SHOWING SINGLE HITS. [ Show Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Microscopy / Localization Data

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No microscopy data found in the PDR for this protein.

Protein Structure Data

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[View Top Sequence Alignments] [Show Ginzu Version Information]

Domains predicted:

#		Region(s)	Method	Confidence	Match Description
1	View Details	[1..111]	PSI-BLAST	9.0	Structure of the DNA repair protein hHR23a
2	View Details	[112..186]	Pfam	5.657577	No description for PF08325.1 was found. No confident structure predictions are available.
3	View Details	[187..282]	FFAS03	1.19	No description for 2ckiA was found.

Functions predicted (by domain):

#

Gene Ontology predictions

1

Term	Confidence	Notes
SUMO ligase activity	3.84399877513864	bayes_pls_golite062009
small conjugating protein ligase activity	3.47895265760328	bayes_pls_golite062009
ubiquitin-protein ligase activity	2.57856532055016	bayes_pls_golite062009
acid-amino acid ligase activity	2.56275248067993	bayes_pls_golite062009
binding	2.19381585790185	bayes_pls_golite062009
protein tag	2.15059229834935	bayes_pls_golite062009
protein binding	1.61605321739306	bayes_pls_golite062009
ligase activity, forming carbon-nitrogen bonds	1.25223828115784	bayes_pls_golite062009
phosphotransferase activity, alcohol group as acceptor	0.536856055841234	bayes_pls_golite062009
kinase activity	0.506057697290914	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	0.410719674374641	bayes_pls_golite062009
nucleic acid binding	0.383121378043805	bayes_pls_golite062009
protein kinase activity	0.325253662829604	bayes_pls_golite062009
transferase activity	0.236208643697075	bayes_pls_golite062009
DNA binding	0.0840213088061073	bayes_pls_golite062009
transcription regulator activity	0.0485636215870291	bayes_pls_golite062009

2

No functions predicted.

3

No functions predicted.

Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

Philius Transmembrane Prediction:

Protein predicted to be:	GLOBULAR (No transmembrane regions or signal peptide)
Confidence of classification:	0.99

Source: Reynolds et al. (2008)

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle