YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: ALY1

General Information:
Name(s) found: ALY1 / YKR021W [SGD]
Description(s) found:
Found 23 descriptions.
SHOW ALL
  • Protein proposed to regulate the endocytosis of plasma membrane proteins by recruiting the ubiquitin ligase Rsp5p to its target in the plasma membrane; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm [SGD]
    • Organism: Saccharomyces cerevisiae
    Length: 915 amino acids

    Gene Ontology:
    Cellular Component: cytoplasm [IDALink to PubMed article]
    Biological Process: biological_process [ND]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLQFNTENDT VAPVFPMEQD INAAPDAVPL VQTTTLQVFV KLAEPIVFLK GFETNGLSEI  60
   61 APSILRGSLI VRVLKPNKLK SISITFKGIS RTEWPEGIPP KREEFSDVET VVNHTWPFYQ 120
  121 ADDGMNSFTL EHHSSNNSSN RPSMSDEDYL LEKSGASVYI PPTAEPPKDN SNLSLDAYER 180
  181 NSLSSDNLSN KPVSSDVSHD DSKLLAIQKT PLPSSSRRGS VPANFHGNSL SPHTFISDLF 240
  241 TKTFSNSGAT PSPEQEDNYL TPSKDSKEVF IFRPGDYIYT FEQPISQSYP ESIKANFGSV 300
  301 EYKLSIDIER FGAFKSTIHT QLPIKVVRLP SDGSVEETEA IAISKDWKDL LHYDVVIFSK 360
  361 EIVLNAFLPI DFHFAPLDKV TLHRIRIYLT ESMEYTCNSN GNHEKARRLE PTKKFLLAEH 420
  421 NGPKLPHIPA GSNPLKAKNR GNILLDEKSG DLVNKDFQFE VFVPSKFTNS IRLHPDTNYD 480
  481 KIKAHHWIKI CLRLSKKYGD NRKHFEISID SPIHILNQLC SHANTLLPSY ESHFQYCDED 540
  541 GNFAPAADQQ NYASHHDSNI FFPKEVLSSP VLSPNVQKMN IRIPSDLPVV RNRAESVKKS 600
  601 KSDNTSKKND QSSNVFASKQ LVANIYKPNQ IPRELTSPQA LPLSPITSPI LNYQPLSNSP 660
  661 PPDFDFDLAK RGAADSHAIP VDPPSYFDVL KADGIELPYY DTSSSKIPEL KLNKSRETLA 720
  721 SIEEDSFNGW SQIDDLSDED DNDGDIASGF NFKLSTSAPS ENVNSHTPIL QSLNMSLDGR 780
  781 KKNRASLHAT SVLPSTIRQN NQHFNDINQM LGSSDEDAFP KSQSLNFNKK LPILKINDNV 840
  841 IQSNSNSNNR VDNPEDTVDS SVDITAFYDP RMSSDSKFDW EVSKNHVDPA AYSVNVASEN 900
  901 RVLDDFKKAF REKRK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run RPA135 No Comments Schneider, DA, et al. (2006)
    View Run MLP2 #32 Asynchronous Prep-No Phosphopeptide enrichment Keck JM, et al. (2011)
    View Run MLP2 #29 Asynchronous Prep5-TiO2 Flowthrough Keck JM, et al. (2011)
    View Run MLP2 #12 Mitotic Prep1-TiO2 Flowthrough Keck JM, et al. (2011)
    View Run MLP2 #11 Mitotic Prep1-TiO2 enriched, new search criteria Keck JM, et al. (2011)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

      PROTEIN(S) PUBLICATION
    View Data ALY1 Huh WK, et al. (2003)

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..146] deduced N/A No confident structure predictions are available.
    2 View Details [147..291]
    [299..329]
    [517..572]    		 PSI-BLAST 87.522879 Arrestin
    3 View Details [292..298]
    [330..516]    		 PSI-BLAST 87.522879 Arrestin
    4 View Details [573..729] MSA 3.038997 View MSA. No confident structure predictions are available.
    5 View Details [730..915] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  0.637053679668866 bayes_pls_golite062009
  • protein binding
    		•  0.29496902337062 bayes_pls_golite062009
    3 No functions predicted.
    4 No functions predicted.
    5 No functions predicted.


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle