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Protein Overview: gi|24374050, gi|...

General Information:
Name(s) found: gi|24374050 [NCBI NR]
gi|24348524 [NCBI NR]
Description(s) found:
Found 5 descriptions.
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  • gi|24374050|ref|NP_718093.1| excinuclease ABC subunit B [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24348524|gb|AAN55537.1|AE015692_7 excinuclease ABC, B subunit [Shewanella oneidensis MR-1] [NCBI NR]
    • Organism: Shewanella oneidensis MR-1
    Length: 673 amino acids

    Gene Ontology:
    Cellular Component: excinuclease repair complex [ISSLink to PubMed article]
    Biological Process: DNA repair [ISSLink to PubMed article]
    Molecular Function: excinuclease ABC activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSESVFQLES QFAPAGDQPT AIAKLVDGLE SGLACQTLLG VTGSGKTFTI ANVIAKLGRP  60
   61 TIIMAPNKTL AAQLYGEMKE FFPNNAVEYF VSYYDYYQPE AYVPASNTFI EKDASVNAHI 120
  121 EQMRLSATKA LLERKDVVLI ASVSAIYGLG DPDSYLKMLL HLRQGDTMGQ RDILKRLSEL 180
  181 QYTRNDIELQ RGTFRVRGEV IDIFPADSDR YAIRVELFDD EIERLSEFDP LTGQIVKRIA 240
  241 RTTVYPKTHY VTPREKILEA TELIKQELRE RKQYLLDNNK LIEAQRIHER VQYDIEMMVE 300
  301 LGYCSGIENY SRYLSGRAPG EGPPTLLDYL PADGLLVIDE SHVTVPQIGA MYKGDRSRKT 360
  361 TLVEYGFRLP SALDNRPLKF EEFEQLMPQT IYVSATPNSY ELEKSGGEIV EQVVRPTGLL 420
  421 DPELEVRPVG IQVDDLLSEV AKRVAVNERV LVTTLTKRMS EDLTEYLDEH GVKVRYLHSD 480
  481 IDTVERVEII RDLRLGKFDV LVGINLLREG LDMPEVSLVC ILDADKEGFL RSERSLIQTI 540
  541 GRAARNVNGK VILYADRITN SMAKAIGETE RRREKQRLYN LEHGIVPKGV VKRITDVMDV 600
  601 DDGREAEKGH GQASLGRVAE PKAKRYHADA AQLSHDIDKL EKQMHEHARN LEFEQAAALR 660
  661 DEVKRLRELL ISA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..673] PSI-BLAST 163.0 No description for 2fdcA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • excinuclease ABC activity
    		•  5.91827223943373 bayes_pls_golite062009
  • deoxyribonuclease activity
    		•  4.52431729843694 bayes_pls_golite062009
  • endodeoxyribonuclease activity
    		•  4.41230474363541 bayes_pls_golite062009
  • nucleoside-triphosphatase activity
    		•  2.16381244011837 bayes_pls_golite062009
  • pyrophosphatase activity
    		•  2.13284212711072 bayes_pls_golite062009
  • endonuclease activity
    		•  2.12922730447008 bayes_pls_golite062009
  • nuclease activity
    		•  2.12602017474763 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides
    		•  2.11265775498161 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
    		•  2.11046854230259 bayes_pls_golite062009
  • hydrolase activity
    		•  1.66122526893602 bayes_pls_golite062009
  • ATPase activity
    		•  1.53315090215319 bayes_pls_golite062009
  • binding
    		•  1.41264401383678 bayes_pls_golite062009
  • DNA-dependent ATPase activity
    		•  1.1653223755451 bayes_pls_golite062009
  • hydrolase activity, acting on ester bonds
    		•  1.1559322833317 bayes_pls_golite062009
  • catalytic activity
    		•  1.00104173493322 bayes_pls_golite062009
  • helicase activity
    		•  0.895387263223335 bayes_pls_golite062009
  • DNA helicase activity
    		•  0.8104901979223 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.216266069700019 bayes_pls_golite062009
  • ATP-dependent helicase activity
    		•  0.156322124775303 bayes_pls_golite062009
  • purine NTP-dependent helicase activity
    		•  0.156322124775303 bayes_pls_golite062009
  • nucleotide binding
    		•  0.114848452385726 bayes_pls_golite062009
  • purine nucleotide binding
    		•  0.10713474095071 bayes_pls_golite062009
  • purine ribonucleotide binding
    		•  0.0916519414118148 bayes_pls_golite062009
  • ribonucleotide binding
    		•  0.0915913646217636 bayes_pls_golite062009
  • ATP-dependent DNA helicase activity
    		•  0.0398638249772338 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle