YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24374050, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	673 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24374050, gi|....

Description	E-value	Query Range	Subject Range
gi\|78693318, gi\|... - gi\|78693318\|ref\|ZP_00857832.1\| Excinuclease ABC, B subunit [Bradyrhizobium sp. BTAi1], gi\|78518873\|g...	593.0	[0..5]	[672..229]
gi\|75676679, gi\|... - gi\|75676679\|ref\|YP_319100.1\| excinuclease ABC subunit B [Nitrobacter winogradskyi Nb-255], gi\|744215...	591.0	[0..5]	[672..233]
gi\|90337932, gi\|... - gi\|90418260\|ref\|ZP_01226172.1\| excinuclease ABC, B subunit (helicase subunit of the DNA excision rep... gi\|90337932, gi\|... - gi\|90418260\|ref\|ZP_01226172.1\| excinuclease ABC, B subunit (helicase subunit of the DNA excision rep...	590.0	[0..5]	[672..191]
gi\|114537857, gi... - gi\|114706909\|ref\|ZP_01439809.1\| excinuclease ABC subunit B [Fulvimarina pelagi HTCC2506], gi\|1145378...	590.0	[0..5]	[672..182]
gi\|85716011, gi\|... - gi\|85716011\|ref\|ZP_01046988.1\| excinuclease ABC subunit B [Nitrobacter sp. Nb-311A], gi\|85697209\|gb\|...	589.0	[0..5]	[672..212]
gi\|92118421, gi\|... - gi\|92118421\|ref\|YP_578150.1\| excinuclease ABC subunit B [Nitrobacter hamburgensis X14], gi\|91801315\|...	587.0	[0..5]	[672..219]
gi\|77652893, gi\|... - gi\|91978448\|ref\|YP_571107.1\| excinuclease ABC subunit B [Rhodopseudomonas palustris BisB5], gi\|91684...	587.0	[0..5]	[672..262]
gi\|27355714, gi\|... - gi\|27382542\|ref\|NP_774071.1\| excinuclease ABC subunit B [Bradyrhizobium japonicum USDA 110], gi\|2735...	586.0	[0..5]	[672..192]
gi\|15074835 - gi\|15074835\|emb\|CAC46480.1\| Probable excinuclease ABC subunit B [Sinorhizobium meliloti 1021] gi\|15965654 - gi\|15965654\|ref\|NP_386007.1\| excinuclease ABC subunit B [Sinorhizobium meliloti 1021]	585.0	[0..6]	[672..158]
gi\|45915824, gi\|... - gi\|69276840\|ref\|ZP_00612312.1\| Excinuclease ABC, B subunit [Mesorhizobium sp. BNC1], gi\|68191739\|gb\|...	585.0	[0..5]	[672..139]

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Predicted Domain #1

Region A:
Residues: [1-673]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSESVFQLES QFAPAGDQPT AIAKLVDGLE SGLACQTLLG VTGSGKTFTI ANVIAKLGRP  60
   61 TIIMAPNKTL AAQLYGEMKE FFPNNAVEYF VSYYDYYQPE AYVPASNTFI EKDASVNAHI 120
  121 EQMRLSATKA LLERKDVVLI ASVSAIYGLG DPDSYLKMLL HLRQGDTMGQ RDILKRLSEL 180
  181 QYTRNDIELQ RGTFRVRGEV IDIFPADSDR YAIRVELFDD EIERLSEFDP LTGQIVKRIA 240
  241 RTTVYPKTHY VTPREKILEA TELIKQELRE RKQYLLDNNK LIEAQRIHER VQYDIEMMVE 300
  301 LGYCSGIENY SRYLSGRAPG EGPPTLLDYL PADGLLVIDE SHVTVPQIGA MYKGDRSRKT 360
  361 TLVEYGFRLP SALDNRPLKF EEFEQLMPQT IYVSATPNSY ELEKSGGEIV EQVVRPTGLL 420
  421 DPELEVRPVG IQVDDLLSEV AKRVAVNERV LVTTLTKRMS EDLTEYLDEH GVKVRYLHSD 480
  481 IDTVERVEII RDLRLGKFDV LVGINLLREG LDMPEVSLVC ILDADKEGFL RSERSLIQTI 540
  541 GRAARNVNGK VILYADRITN SMAKAIGETE RRREKQRLYN LEHGIVPKGV VKRITDVMDV 600
  601 DDGREAEKGH GQASLGRVAE PKAKRYHADA AQLSHDIDKL EKQMHEHARN LEFEQAAALR 660
  661 DEVKRLRELL ISA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	163.0
Match:	2fdcA
Description:	No description for 2fdcA was found.

Predicted functions:

Term	Confidence	Notes
excinuclease ABC activity	5.91827223943373	bayes_pls_golite062009
deoxyribonuclease activity	4.52431729843694	bayes_pls_golite062009
endodeoxyribonuclease activity	4.41230474363541	bayes_pls_golite062009
nucleoside-triphosphatase activity	2.16381244011837	bayes_pls_golite062009
pyrophosphatase activity	2.13284212711072	bayes_pls_golite062009
endonuclease activity	2.12922730447008	bayes_pls_golite062009
nuclease activity	2.12602017474763	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	2.11265775498161	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	2.11046854230259	bayes_pls_golite062009
hydrolase activity	1.66122526893602	bayes_pls_golite062009
ATPase activity	1.53315090215319	bayes_pls_golite062009
binding	1.41264401383678	bayes_pls_golite062009
DNA-dependent ATPase activity	1.1653223755451	bayes_pls_golite062009
hydrolase activity, acting on ester bonds	1.1559322833317	bayes_pls_golite062009
catalytic activity	1.00104173493322	bayes_pls_golite062009
helicase activity	0.895387263223335	bayes_pls_golite062009
DNA helicase activity	0.8104901979223	bayes_pls_golite062009
nucleic acid binding	0.216266069700019	bayes_pls_golite062009
ATP-dependent helicase activity	0.156322124775303	bayes_pls_golite062009
purine NTP-dependent helicase activity	0.156322124775303	bayes_pls_golite062009
nucleotide binding	0.114848452385726	bayes_pls_golite062009
purine nucleotide binding	0.10713474095071	bayes_pls_golite062009
purine ribonucleotide binding	0.0916519414118148	bayes_pls_golite062009
ribonucleotide binding	0.0915913646217636	bayes_pls_golite062009
ATP-dependent DNA helicase activity	0.0398638249772338	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: