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Protein Overview: ATG8C_ARATH

General Information:
Name(s) found: ATG8C_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|75160544|sp|Q8S927.1|ATG8C_ARATH RecName: Full=Autophagy-related protein 8c; AltName: Full=Autophagy-related ubiquitin-like modifier ATG8c; Short=Protein autophagy 8c; Short=AtAPG8c; Flags: Precursor [NCBI NR]
  • gi|28973073|gb|AAO63861.1| putative symbiosis-related protein [Arabidopsis thaliana] [NCBI NR]
  • gi|26452569|dbj|BAC43369.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • gi|21554003|gb|AAM63084.1| symbiosis-related protein, putative [Arabidopsis thaliana] [NCBI NR]
  • gi|19912155|dbj|BAB88389.1| autophagy 8c [Arabidopsis thaliana] [NCBI NR]
  • gi|15220686|ref|NP_176395.1| ATG8C (autophagy 8c); microtubule binding [Arabidopsis thaliana] [NCBI NR]
  • Autophagy-related protein 8c OS=Arabidopsis thaliana GN=ATG8C PE=1 SV=1 [Swiss-Prot]
  • symbiosis-related protein, putative [Arabidopsis thaliana]gi|26452569|dbj|BAC43369.1| unknown protein [Arabidopsis thaliana]gi|28973073|gb|AAO63861.1| putative symbiosis-related protein [Arabidopsis thaliana]gi|15220686|ref|NP_176395.1| autophagy 8c (A [nrdb_11152004_Chlamydomonas]
  • | Symbols: ATG8C | ATG8C (AUTOPHAGY 8C); microtubule binding | chr1:22936881-22937918 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • autophagy 8c [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • putative symbiosis-related protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • symbiosis-related protein, putative [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • microtubule binding [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: ATG8C | Ubiquitin-like superfamily protein | chr1:22933216-22934253 FORWARD LENGTH=119 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Autophagy-related protein 8c OS=Arabidopsis thaliana GN=ATG8C PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 119 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: autophagy [ISS]
    Molecular Function: microtubule binding [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANSSFKLEH PLERRQIESS RIREKYPDRI PVIVERAERS DVPNIDKKKY LVPADLTVGQ  60
   61 FVYVVRKRIK LSAEKAIFVF VKNTLPPTAA MMSAIYDENK DEDGFLYMTY SGENTFGLV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..119] PSI-BLAST 58.522879 Golgi-associated ATPase enhancer of 16 kD, Gate-16

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • tubulin binding
    		•  3.8719684227967 bayes_pls_golite062009
  • small conjugating protein ligase activity
    		•  3.71144418714309 bayes_pls_golite062009
  • microtubule binding
    		•  3.61517229466799 bayes_pls_golite062009
  • ubiquitin-protein ligase activity
    		•  3.30801071565148 bayes_pls_golite062009
  • cytoskeletal protein binding
    		•  3.11253399564789 bayes_pls_golite062009
  • beta-tubulin binding
    		•  2.878827078106 bayes_pls_golite062009
  • binding
    		•  2.786655943372 bayes_pls_golite062009
  • acid-amino acid ligase activity
    		•  2.72499875710239 bayes_pls_golite062009
  • GABA receptor binding
    		•  2.41579236188889 bayes_pls_golite062009
  • protein tag
    		•  2.15059229834935 bayes_pls_golite062009
  • protein binding
    		•  1.86841453215444 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.42747465816672 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.32707653701567 bayes_pls_golite062009
  • DNA binding
    		•  1.22622447288034 bayes_pls_golite062009
  • molecular transducer activity
    		•  0.87452559909702 bayes_pls_golite062009
  • signal transducer activity
    		•  0.87452559909702 bayes_pls_golite062009
  • SUMO ligase activity
    		•  0.80391127659342 bayes_pls_golite062009
  • hydrolase activity
    		•  0.79940718386175 bayes_pls_golite062009
  • ligase activity, forming carbon-nitrogen bonds
    		•  0.753885975469065 bayes_pls_golite062009
  • structural constituent of ribosome
    		•  0.599634454232833 bayes_pls_golite062009
  • structural molecule activity
    		•  0.576819726104993 bayes_pls_golite062009
  • phosphotransferase activity, alcohol group as acceptor
    		•  0.536856055841234 bayes_pls_golite062009
  • kinase activity
    		•  0.506057697290914 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  0.410719674374641 bayes_pls_golite062009
  • protein kinase activity
    		•  0.325253662829604 bayes_pls_golite062009
  • enzyme binding
    		•  0.240262781026149 bayes_pls_golite062009
  • transferase activity
    		•  0.236208643697075 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle