YRC Public Data Repository - Protein Structure Prediction

Protein:	SUCC_ECOLI
Organism:	Escherichia coli
Length:	388 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SUCC_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|229329559, gi... - gi\|229499501\|ref\|ZP_04393185.1\| succinyl-CoA synthetase, beta subunit [Geobacillus sp. Y412MC52], gi... gi\|220708091, gi... - gi\|221088098\|ref\|ZP_03557632.1\| succinyl-CoA synthetase, beta subunit [Geobacillus sp. Y412MC61], gi... SUCC_GEOKA - Succinyl-CoA ligase [ADP-forming] subunit beta OS=Geobacillus kaustophilus (strain HTA426) GN=sucC P... SUCC_GEOKA - Succinyl-CoA ligase [ADP-forming] subunit beta OS=Geobacillus kaustophilus GN=sucC PE=3 SV=1	356.0	[0..1]	[386..1]
SUCC_BACAC - Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bacillus anthracis (strain CDC 684 / NRRL 3495) GN... gi\|170125736, gi... - gi\|170709362\|ref\|ZP_02899776.1\| succinate-CoA ligase (ADP-forming), beta subunit [Bacillus anthracis... gi\|172079897, gi... - gi\|177655998\|ref\|ZP_02937125.1\| succinate-CoA ligase (ADP-forming), beta subunit [Bacillus anthracis... SUCC_BACAN - Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bacillus anthracis GN=sucC PE=3 SV=1 gi\|47504412, gi\|... - gi\|47529264\|ref\|YP_020613.1\| succinyl-CoA synthetase subunit beta [Bacillus anthracis str. 'Ames Anc... gi\|30263839, gi\|... - gi\|30263839\|ref\|NP_846216.1\| succinyl-CoA synthetase subunit beta [Bacillus anthracis str. Ames], gi... gi\|65321163, gi\|... - gi\|65321163\|ref\|ZP_00394122.1\| COG0045: Succinyl-CoA synthetase, beta subunit [Bacillus anthracis st... gi\|164710949, gi... - gi\|165873311\|ref\|ZP_02217916.1\| succinate-CoA ligase (ADP-forming), beta subunit [Bacillus anthracis... gi\|167510013, gi... - gi\|167642033\|ref\|ZP_02400263.1\| succinate-CoA ligase (ADP-forming), beta subunit [Bacillus anthracis... gi\|49186686, gi\|... - gi\|49186686\|ref\|YP_029938.1\| succinyl-CoA synthetase subunit beta [Bacillus anthracis str. Sterne], ... gi\|170666386, gi... - gi\|170689662\|ref\|ZP_02880842.1\| succinate-CoA ligase (ADP-forming), beta subunit [Bacillus anthracis... gi\|254751205 - gi\|254751205\|ref\|ZP_05203244.1\| succinyl-CoA synthetase subunit beta [Bacillus anthracis str. Vollum... gi\|254739601 - gi\|254739601\|ref\|ZP_05197295.1\| succinyl-CoA synthetase subunit beta [Bacillus anthracis str. Kruger... gi\|254735874 - gi\|254735874\|ref\|ZP_05193580.1\| succinyl-CoA synthetase subunit beta [Bacillus anthracis str. Wester... gi\|254721978 - gi\|254721978\|ref\|ZP_05183767.1\| succinyl-CoA synthetase subunit beta [Bacillus anthracis str. A1055] gi\|254683457 - gi\|254683457\|ref\|ZP_05147317.1\| succinyl-CoA synthetase subunit beta [Bacillus anthracis str. CNEVA-... SUCC_BACAA - Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bacillus anthracis (strain A0248) GN=sucC PE=3 SV=...	352.0	[0..1]	[385..1]
gi\|89098658, gi\|... - gi\|89098658\|ref\|ZP_01171540.1\| succinyl-CoA synthetase subunit beta [Bacillus sp. NRRL B-14911], gi\|...	352.0	[0..1]	[385..1]
SUCC_BACLD - Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bacillus licheniformis (strain ATCC 14580 / DSM 13...	352.0	[0..1]	[386..1]
gi\|228986979, gi... - gi\|228986979\|ref\|ZP_04147105.1\| Succinyl-CoA ligase [ADP-forming] subunit beta [Bacillus thuringiens... gi\|228812075, gi... - gi\|228947555\|ref\|ZP_04109845.1\| Succinyl-CoA ligase [ADP-forming] subunit beta [Bacillus thuringiens... gi\|229123350, gi... - gi\|229123350\|ref\|ZP_04252554.1\| Succinyl-CoA ligase [ADP-forming] subunit beta [Bacillus cereus 95/8... gi\|229092878, gi... - gi\|229092878\|ref\|ZP_04224012.1\| Succinyl-CoA ligase [ADP-forming] subunit beta [Bacillus cereus Rock... gi\|228597252, gi... - gi\|229186076\|ref\|ZP_04313245.1\| Succinyl-CoA ligase [ADP-forming] subunit beta [Bacillus cereus BGSC... gi\|229140478, gi... - gi\|229140478\|ref\|ZP_04269033.1\| Succinyl-CoA ligase [ADP-forming] subunit beta [Bacillus cereus BDRD... gi\|229197946, gi... - gi\|229197946\|ref\|ZP_04324661.1\| Succinyl-CoA ligase [ADP-forming] subunit beta [Bacillus cereus m129... gi\|47553002, gi\|... - gi\|47570337\|ref\|ZP_00240982.1\| succinyl-CoA synthetase beta chain [Bacillus cereus G9241], gi\|475530... SUCC_BACHK - Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bacillus thuringiensis subsp. konkukian GN=sucC PE... SUCC_BACCZ - Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bacillus cereus (strain ZK / E33L) GN=sucC PE=3 SV... SUCC_BACC7 - Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bacillus cereus (strain AH187) GN=sucC PE=3 SV=1 SUCC_BACAH - Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bacillus thuringiensis (strain Al Hakam) GN=sucC P... SUCC_BACCQ - Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bacillus cereus (strain Q1) GN=sucC PE=3 SV=1 SUCC_BACC1 - Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bacillus cereus (strain ATCC 10987 / NRS 248) GN=s... SUCC_BACHK - Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bacillus thuringiensis subsp. konkukian (strain 97... SUCC_BACC3 - Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bacillus cereus (strain 03BB102) GN=sucC PE=3 SV=1 gi\|228935150, gi... - gi\|228935150\|ref\|ZP_04097977.1\| Succinyl-CoA ligase [ADP-forming] subunit beta [Bacillus thuringiens... gi\|228843052, gi... - gi\|228916473\|ref\|ZP_04080039.1\| Succinyl-CoA ligase [ADP-forming] subunit beta [Bacillus thuringiens...	351.0	[0..1]	[385..1]
SUCC_BACHD - Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bacillus halodurans GN=sucC PE=3 SV=1 SUCC_BACHD - Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 181...	351.0	[0..1]	[386..1]
gi\|53728850 - gi\|53728850\|ref\|ZP_00134895.2\| COG0045: Succinyl-CoA synthetase, beta subunit [Actinobacillus pleuro... SUCC_ACTP2 - Succinyl-CoA ligase [ADP-forming] subunit beta OS=Actinobacillus pleuropneumoniae serotype 5b (strai...	350.0	[0..1]	[388..1]
SUCC_BACCR - Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM ...	349.0	[0..1]	[385..1]
SUCC_BACSU - Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bacillus subtilis GN=sucC PE=1 SV=2 SUCC_BACSU - Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bacillus subtilis (strain 168) GN=sucC PE=1 SV=2 gi\|221313809 - gi\|221313809\|ref\|ZP_03595614.1\| succinyl-CoA synthetase subunit beta [Bacillus subtilis subsp. subti... gi\|221318733 - gi\|221318733\|ref\|ZP_03600027.1\| succinyl-CoA synthetase subunit beta [Bacillus subtilis subsp. subti... gi\|221323004 - gi\|221323004\|ref\|ZP_03604298.1\| succinyl-CoA synthetase subunit beta [Bacillus subtilis subsp. subti...	347.0	[0..1]	[385..1]
gi\|90406989, gi\|... - gi\|90406989\|ref\|ZP_01215179.1\| succinyl-CoA synthetase subunit beta [Psychromonas sp. CNPT3], gi\|903...	347.0	[0..1]	[387..1]

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Predicted Domain #1

Region A:
Residues: [1-388]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLHEYQAKQ LFARYGLPAP VGYACTTPRE AEEAASKIGA GPWVVKCQVH AGGRGKAGGV  60
   61 KVVNSKEDIR AFAENWLGKR LVTYQTDANG QPVNQILVEA ATDIAKELYL GAVVDRSSRR 120
  121 VVFMASTEGG VEIEKVAEET PHLIHKVALD PLTGPMPYQG RELAFKLGLE GKLVQQFTKI 180
  181 FMGLATIFLE RDLALIEINP LVITKQGDLI CLDGKLGADG NALFRQPDLR EMRDQSQEDP 240
  241 REAQAAQWEL NYVALDGNIG CMVNGAGLAM GTMDIVKLHG GEPANFLDVG GGATKERVTE 300
  301 AFKIILSDDK VKAVLVNIFG GIVRCDLIAD GIIGAVAEVG VNVPVVVRLE GNNAELGAKK 360
  361 LADSGLNIIA AKGLTDAAQQ VVAAVEGK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	90.39794
Match:	1jkjB
Description:	Succinyl-CoA synthetase, beta-chain, C-terminal domain; Succinyl-CoA synthetase, beta-chain, N-terminal domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
succinate-CoA ligase (GDP-forming) activity	9.38156037766008	bayes_pls_golite062009
succinate-CoA ligase activity	9.37213380498009	bayes_pls_golite062009
CoA-ligase activity	8.19630272128785	bayes_pls_golite062009
acid-thiol ligase activity	7.98453115335343	bayes_pls_golite062009
succinate-CoA ligase (ADP-forming) activity	7.27105019329796	bayes_pls_golite062009
ligase activity, forming carbon-sulfur bonds	7.23103788464777	bayes_pls_golite062009
ligase activity	3.25077459445999	bayes_pls_golite062009
ATP citrate synthase activity	3.09252003125984	bayes_pls_golite062009
transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer	3.07329302783164	bayes_pls_golite062009
catalytic activity	2.5009559386228	bayes_pls_golite062009
CoA carboxylase activity	1.75094739650292	bayes_pls_golite062009
ligase activity, forming carbon-carbon bonds	1.59015373957506	bayes_pls_golite062009
acetyl-CoA carboxylase activity	1.29064883699349	bayes_pls_golite062009
transferase activity, transferring acyl groups	1.15639517822408	bayes_pls_golite062009
ligase activity, forming carbon-nitrogen bonds	0.992008268375695	bayes_pls_golite062009
binding	0.346654244533873	bayes_pls_golite062009
biotin carboxylase activity	0.0172732430077291	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: