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View Structure Prediction Details

Protein: gi|15230632, gi|...
Organism: Arabidopsis thaliana
Length: 73 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15230632, gi|....

Description E-value Query
Range
Subject
Range
gi|115487294, gi... - gi|77553656|gb|ABA96452.1| GRF zinc finger family protein [Oryza sativa (japonica cultivar-group)], ...
151.0 [0..1] [73..206]

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Predicted Domain #1
Region A:
Residues: [1-73]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIEVVLNDRL GKKVRVKCNE EDTIGDLKKL VAAQTGTRPE KIRIQKWYNI YKDHIPLKDY  60
   61 EIHDGMGLEL YYN

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Detection Method: PSI-BLAST
Confidence: 34.522879
Match: 1uh6A
Description: Solution Structure of the murine ubiquitin-like 5 protein from RIKEN cDNA 0610031K06
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
small conjugating protein ligase activity 3.47895265760328 bayes_pls_golite062009
ubiquitin-protein ligase activity 2.99122127270119 bayes_pls_golite062009
binding 2.5881743465274 bayes_pls_golite062009
acid-amino acid ligase activity 2.56275248067993 bayes_pls_golite062009
protein tag 2.15059229834935 bayes_pls_golite062009
protein binding 1.76858817153382 bayes_pls_golite062009
ligase activity, forming carbon-nitrogen bonds 1.25223828115784 bayes_pls_golite062009
transcription regulator activity 1.11533445164506 bayes_pls_golite062009
RNA binding 1.00651240292915 bayes_pls_golite062009
nucleic acid binding 0.896431097217265 bayes_pls_golite062009
DNA binding 0.859811565165317 bayes_pls_golite062009
SUMO ligase activity 0.80391127659342 bayes_pls_golite062009
phosphotransferase activity, alcohol group as acceptor 0.536856055841234 bayes_pls_golite062009
kinase activity 0.506057697290914 bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups 0.410719674374641 bayes_pls_golite062009
protein kinase activity 0.325253662829604 bayes_pls_golite062009
transferase activity 0.236208643697075 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle