| Protein: | gi|12324934, gi|... |
| Organism: | Arabidopsis thaliana |
| Length: | 767 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|12324934, gi|....
| Description | E-value | Query Range |
Subject Range |
|
|
580.0 | [0..45] | [767..38] |
|
Region A: Residues: [1-237] |
1 11 21 31 41 51
| | | | | |
1 MAFTFLSPHP VFLSLTGTTS SFSYKPVLLP FSRNSRTLTV AAGPARRNSY PNPADDDPPE 60
61 APEDSMHGVS KFQQIQRQAA RARKLEEEDF EKNRNTYLSA IADVEDAAET GRDDEESGGD 120
121 LFSDIDRAIS MKRSEFVKQG LLKPNPPKTA SLKKIGEEGN EEEGDVTDDV DELDEEEVVD 180
181 LDEIDKLTGL TEISDEEDWV DEEGNTRINK KKEFGSDHQF EFDLDDFGES KARIVEP
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [238-767] |
1 11 21 31 41 51
| | | | | |
1 KFKMCLAELL DESKVVPISV YGDLDVEITG IQHDSRGVSA GDLFVCCLGS ENFLSEADKR 60
61 GAVAVVASKE IDIEDTLGCR ALVIVEDTNA VLAALASSFY RHPSKNMSVI GVTGTDGKTT 120
121 TTYLIKSLYE AMGVRTGMFS TVSCYIHGDN KLDTPNATMN PDAVLVQSLM AKMLHNGTES 180
181 LVMEASPQEL ALGKCDEVDF DIAVFTNLTR ENTDFRGTDE EYRDAEAKLF SRMVDPERHR 240
241 KVVNIDDPNA AFFVQQGNPN VPVVTFAMEN TKADVHPLKF ELSLFETQVL VNTPQGILEI 300
301 SSGLLGRHNI YNILAAVAVG IAVGAPLEDI VRGVEEVDAV PGRCELIDEE QAFGVIVDHA 360
361 NTPDGLSRLL DSIRELKPRR IITVIGCEGE NERGKRPLMT KIATEKSDVT MLTSDNPRNE 420
421 DPLDILDDML SGIGWTMQEY LKHGEHDYYP PLANGHRLFL HDIRRVAVRC AVAMGEEGDM 480
481 VVVAGKGHEA YQLEGEKKEF YDDREECREA LQYVDELHQA GIDTSEFPWR
|
| Detection Method: | |
| Confidence: | 98.0 |
| Match: | 1e8cA |
| Description: | UDP-N-acetylmuramyl tripeptide synthetase MurE |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| acid-amino acid ligase activity | 4.86493054281191 | bayes_pls_golite062009 |
| catalytic activity | 3.03081854683329 | bayes_pls_golite062009 |
| UDP-N-acetylmuramate-L-alanine ligase activity | 2.62956763198067 | bayes_pls_golite062009 |
| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase activity | 2.38541436302257 | bayes_pls_golite062009 |
| ligase activity | 2.2556848409907 | bayes_pls_golite062009 |
| ligase activity, forming carbon-nitrogen bonds | 2.19206014001612 | bayes_pls_golite062009 |
| UDP-N-acetylmuramoylalanine-D-glutamate ligase activity | 1.471039191151 | bayes_pls_golite062009 |
| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity | 1.15437935952018 | bayes_pls_golite062009 |
