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View Structure Prediction Details

Protein: SUCC_BACSU
Organism: Bacillus subtilis
Length: 385 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SUCC_BACSU.

Description E-value Query
Range
Subject
Range
gi|229329559, gi... - gi|229499501|ref|ZP_04393185.1| succinyl-CoA synthetase, beta subunit [Geobacillus sp. Y412MC52], gi...
gi|220708091, gi... - gi|221088098|ref|ZP_03557632.1| succinyl-CoA synthetase, beta subunit [Geobacillus sp. Y412MC61], gi...
SUCC_GEOKA - Succinyl-CoA ligase [ADP-forming] subunit beta OS=Geobacillus kaustophilus (strain HTA426) GN=sucC P...
SUCC_GEOKA - Succinyl-CoA ligase [ADP-forming] subunit beta OS=Geobacillus kaustophilus GN=sucC PE=3 SV=1
361.0 [0..1] [385..1]

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Predicted Domain #1
Region A:
Residues: [1-385]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNIHEYQGKE VLRKYGVSVP EGKVAFTAEE AVESAKSLSS SVYVVKAQIH AGGRGKAGGV  60
   61 KIAKSLDEVK AYAEELLGKT LVTHQTGPDG QVIKRLLIEE GCDIKKEYYI GLVLDRATSR 120
  121 IVLMASEEGG TEIEEVAEKT PEKIKKAVID PAVGLQGYQA REIAFAINIP KELVGKAAKF 180
  181 MLGLYKAFVE KDCSIAEINP LVVTGDGNVM ALDAKLNFDS NALYRQKDIM EYRDLDEEDP 240
  241 KEIEASKYDL SYISLDGNIG CMVNGAGLAM STMDIIKHYG GEPANFLDVG GGATAEKVTE 300
  301 AFKIILSDQN VKGIFVNIFG GIMKCDVIAE GVVEATRQVG LTLPLVVRLE GTNVDLGKKI 360
  361 LSESGLNITS AESMADGAQK IVSLV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 88.221849
Match: 1cqiB
Description: Succinyl-CoA synthetase, beta-chain, C-terminal domain; Succinyl-CoA synthetase, beta-chain, N-terminal domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
succinate-CoA ligase (GDP-forming) activity 9.38156037766008 bayes_pls_golite062009
succinate-CoA ligase activity 9.37213380498009 bayes_pls_golite062009
CoA-ligase activity 8.19630272128785 bayes_pls_golite062009
acid-thiol ligase activity 7.98453115335343 bayes_pls_golite062009
succinate-CoA ligase (ADP-forming) activity 7.27105019329796 bayes_pls_golite062009
ligase activity, forming carbon-sulfur bonds 7.23103788464777 bayes_pls_golite062009
ligase activity 3.25077459445999 bayes_pls_golite062009
ATP citrate synthase activity 3.09252003125984 bayes_pls_golite062009
transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer 3.07329302783164 bayes_pls_golite062009
catalytic activity 2.5009559386228 bayes_pls_golite062009
CoA carboxylase activity 1.75094739650292 bayes_pls_golite062009
ligase activity, forming carbon-carbon bonds 1.59015373957506 bayes_pls_golite062009
acetyl-CoA carboxylase activity 1.29064883699349 bayes_pls_golite062009
transferase activity, transferring acyl groups 1.15639517822408 bayes_pls_golite062009
ligase activity, forming carbon-nitrogen bonds 0.992008268375695 bayes_pls_golite062009
binding 0.346654244533873 bayes_pls_golite062009
biotin carboxylase activity 0.0172732430077291 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
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