| Protein: | csn-4 |
| Organism: | Caenorhabditis elegans |
| Length: | 412 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for csn-4.
| Description | E-value | Query Range |
Subject Range |
|
|
237.0 | [0..8] | [410..5] |
|
Region A: Residues: [1-138] |
1 11 21 31 41 51
| | | | | |
1 MSGEIERSQE VAVIFAQDTD HKAQYEALAK LCNKYLPQNA MGRVDTAEII KIIDTVIALE 60
61 TGSMVVSRQF VSLITERLDN QHLESECVKA ISEGILAIIK TRTISYEDQV CILRLMLASL 120
121 YEKEGRIKDA AQALIAIN
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [139-300] |
1 11 21 31 41 51
| | | | | |
1 SDTSPKFNGP QAAKEGAKAQ LCIRITKLLL DCSEIDEAEQ YVNRTSILMV DLGANPDIQI 60
61 EHKALQARVS DAKRRFVEAA QRYYELSATE QLPNSDKLTA LGKAIVCVLL AKPGPQRSRL 120
121 LTLIFKDERA PKCASFELIA KMYLTKVIHK DELEEFEHQL QD
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [301-412] |
1 11 21 31 41 51
| | | | | |
1 HQKADEHGES ILKGVIQEHN ITAISQLYIN ISFKTLGQLL GVDTEAAESM AGEMISSERL 60
61 HGYIDQTNGI LHFEDSNPMR VWDSQILSTL EQINKVSDMI VARHSEFAEF LT
|
| Detection Method: | |
| Confidence: | 10.69897 |
| Match: | 1ufmA |
| Description: | Solution structure of the PCI domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 5.09178084244715 | bayes_pls_golite062009 |
| DNA binding | 4.69269372393889 | bayes_pls_golite062009 |
| nucleic acid binding | 4.59221092058767 | bayes_pls_golite062009 |
| transcription factor activity | 4.01234546864709 | bayes_pls_golite062009 |
| binding | 3.52874320222492 | bayes_pls_golite062009 |
| transcription repressor activity | 3.28015281691988 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 2.23304004014963 | bayes_pls_golite062009 |
| transcription activator activity | 2.21230033124772 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 1.40206639526766 | bayes_pls_golite062009 |
| small conjugating protein ligase activity | 1.27763700765562 | bayes_pls_golite062009 |
| ubiquitin-protein ligase activity | 1.12147035668008 | bayes_pls_golite062009 |
| transcription factor binding | 0.78051974537344 | bayes_pls_golite062009 |
| acid-amino acid ligase activity | 0.754042916649094 | bayes_pls_golite062009 |
| protein binding | 0.753698599635855 | bayes_pls_golite062009 |
| specific transcriptional repressor activity | 0.59003343009795 | bayes_pls_golite062009 |
| ligase activity, forming carbon-nitrogen bonds | 0.486434906547244 | bayes_pls_golite062009 |
| hydrolase activity | 0.140191206949582 | bayes_pls_golite062009 |
