YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: acs-21
Organism: Caenorhabditis elegans
Length: 517 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for acs-21.

Description E-value Query
Range
Subject
Range
gi|55981432, gi|... - gi|55981432|ref|YP_144729.1| long-chain-fatty-acid--CoA ligase [Thermus thermophilus HB8], gi|557728...
508.0 [0..5] [515..12]

Back

Predicted Domain #1
Region A:
Residues: [1-517]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLTHHLKSSI HTTAGLRAAT SAANNIISQA NLQSDISKVL FIDDGRKITY GDFVQRAGQY  60
   61 ATALTEKYKI KKGDRVMARV SKTTDTAALY AACLQIGALY VPVNPALTQS EAAHYVKDAK 120
  121 PSLWITCKDD ADQIAMFQRV LKTVCIDNPV EVINEKVLAD EAGKRKACTM IEHVEKSNAA 180
  181 TICFTSGTTG APKGAVLSHG ALTNNTNALV QEWGFTENDV NLHCLPIFHA HGLYFSLHCS 240
  241 LFSHSSVIWR PNFDAEDCSK HLKNATVFMG VPTFYSRLLA TNNFNKESFE KIRLFISGSA 300
  301 PLSVPTLEEF EKRTGQVILE RYGMTEAGVI ASNPLKGKRK AGTVGQALKG VQCRVTENGE 360
  361 IEIKSDSIFS EYWKNPEKTK EEFTEDGWFK TGDVGSLDKD GYLTIGGRSK DMIISGGENI 420
  421 YPKEIEDAID SIEFVKESAV IAAPHPDFGE AVVAVVVPKN MVEDEQKFEE DLIEMLRKKL 480
  481 AKYKVPKKVI LLEELPRNHI TKVRKDILRA SYNKLFS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 115.0
Match: 1ultA
Description: Crystal structure of tt0168 from Thermus thermophilus HB8
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
ligase activity, forming carbon-sulfur bonds 5.10123876514454 bayes_pls_golite062009
acid-thiol ligase activity 4.28278725989432 bayes_pls_golite062009
CoA-ligase activity 4.12850865352867 bayes_pls_golite062009
acetate-CoA ligase activity 3.83959707137518 bayes_pls_golite062009
fatty acid ligase activity 3.10420612952117 bayes_pls_golite062009
long-chain fatty acid-CoA ligase activity 2.84227244567785 bayes_pls_golite062009
ligase activity 2.49556073715112 bayes_pls_golite062009
transcription regulator activity 2.31193176808353 bayes_pls_golite062009
catalytic activity 1.83545185797733 bayes_pls_golite062009
binding 1.5312519256537 bayes_pls_golite062009
transcription repressor activity 1.2638869228049 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle