YRC Public Data Repository - Protein Structure Prediction

Protein:	oct1
Organism:	Schizosaccharomyces pombe
Length:	762 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for oct1.

Description	E-value	Query Range	Subject Range
gi\|91212991, gi\|... - gi\|91212991\|ref\|YP_542977.1\| oligopeptidase A [Escherichia coli UTI89], gi\|91074565\|gb\|ABE09446.1\| o...	664.0	[0..38]	[746..2]
gi\|26250119, gi\|... - gi\|26250119\|ref\|NP_756159.1\| oligopeptidase A [Escherichia coli CFT073], gi\|26110548\|gb\|AAN82733.1\|A...	663.0	[0..38]	[745..2]
gi\|30065219, gi\|... - gi\|30065219\|ref\|NP_839390.1\| oligopeptidase A [Shigella flexneri 2a str. 2457T], gi\|30043481\|gb\|AAP1... gi\|110616881, gi... - gi\|110807333\|ref\|YP_690853.1\| oligopeptidase A [Shigella flexneri 5 str. 8401], gi\|110616881\|gb\|ABF0... gi\|56383906, gi\|... - gi\|56480355\|ref\|NP_709278.2\| oligopeptidase A [Shigella flexneri 2a str. 301], gi\|56383906\|gb\|AAN449...	661.0	[0..51]	[746..1]
gi\|124528584, gi... - gi\|124528584\|ref\|ZP_01699862.1\| Oligopeptidase A [Escherichia coli B], gi\|124500425\|gb\|EAY47898.1\| O... EG11441 - oligopeptidase A / Oligopeptidase A, zinc metalloprotease; involved in the degradation of cleaved si... EG11441 - oligopeptidase A / Oligopeptidase A, zinc metalloprotease; involved in the degradation of cleaved si... gi\|238902587, gi... - gi\|238902587\|ref\|YP_002928383.1\| oligopeptidase A [Escherichia coli BW2952], gi\|238861932\|gb\|ACR6393... gi\|226839176, gi... - gi\|254038670\|ref\|ZP_04872726.1\| oligopeptidase A [Escherichia sp. 1_1_43], gi\|226839176\|gb\|EEH71199.... gi\|89110515, gi\|... - gi\|89110515\|ref\|AP_004295.1\| oligopeptidase A [Escherichia coli str. K-12 substr. W3110], gi\|8567654... gi\|170018272, gi... - gi\|170018272\|ref\|YP_001723226.1\| oligopeptidase A [Escherichia coli ATCC 8739], gi\|169753200\|gb\|ACA7... gi\|75516039, gi\|... - gi\|75516039\|ref\|ZP_00738157.1\| COG0339: Zn-dependent oligopeptidases [Escherichia coli 53638], gi\|18... gi\|75260213, gi\|... - gi\|75260213\|ref\|ZP_00731481.1\| COG0339: Zn-dependent oligopeptidases [Escherichia coli E22], gi\|1930... gi\|170684269, gi... - gi\|170684269\|ref\|YP_001745753.1\| oligopeptidase A [Escherichia coli SMS-3-5], gi\|170521987\|gb\|ACB201... gi\|194414962, gi... - gi\|75211865\|ref\|ZP_00711929.1\| COG0339: Zn-dependent oligopeptidases [Escherichia coli B171], gi\|194... gi\|170083009, gi... - gi\|170083009\|ref\|YP_001732329.1\| oligopeptidase A [Escherichia coli str. K-12 substr. DH10B], gi\|169... OPDA_ECOLI - Oligopeptidase A (EC 3.4.24.70) - Escherichia coli gi\|157162974, gi... - gi\|75197419\|ref\|ZP_00707489.1\| COG0339: Zn-dependent oligopeptidases [Escherichia coli HS], gi\|15716... gi\|218702251, gi... - gi\|218702251\|ref\|YP_002409880.1\| oligopeptidase A [Escherichia coli IAI39], gi\|218372237\|emb\|CAR2009... gi\|209914213, gi... - gi\|209920954\|ref\|YP_002295038.1\| oligopeptidase A [Escherichia coli SE11], gi\|209914213\|dbj\|BAG79287...	661.0	[0..51]	[746..1]
gi\|187730439, gi... - gi\|75179940\|ref\|ZP_00699927.1\| COG0339: Zn-dependent oligopeptidases [Shigella boydii BS512], gi\|187...	661.0	[0..51]	[746..1]
gi\|226902514, gi... - gi\|237703250\|ref\|ZP_04533731.1\| oligopeptidase A [Escherichia sp. 3_2_53FAA], gi\|226902514\|gb\|EEH887... gi\|215488770, gi... - gi\|215488770\|ref\|YP_002331201.1\| oligopeptidase A [Escherichia coli O127:H6 str. E2348/69], gi\|21526... gi\|218367336, gi... - gi\|218560567\|ref\|YP_002393480.1\| oligopeptidase A [Escherichia coli S88], gi\|218367336\|emb\|CAR05114.... gi\|218429341, gi... - gi\|218691777\|ref\|YP_002399989.1\| oligopeptidase A [Escherichia coli ED1a], gi\|218429341\|emb\|CAR10155... gi\|117625776, gi... - gi\|117625776\|ref\|YP_859099.1\| oligopeptidase A [Escherichia coli APEC O1], gi\|115514900\|gb\|ABJ02975....	661.0	[0..51]	[746..1]
gi\|75231653, gi\|... - gi\|75231653\|ref\|ZP_00718011.1\| COG0339: Zn-dependent oligopeptidases [Escherichia coli B7A], gi\|1911... gi\|218697204, gi... - gi\|218697204\|ref\|YP_002404871.1\| oligopeptidase A [Escherichia coli 55989], gi\|218353936\|emb\|CAV0037... gi\|194435751, gi... - gi\|83588644\|ref\|ZP_00927268.1\| COG0339: Zn-dependent oligopeptidases [Escherichia coli 101-1], gi\|19... gi\|218556046, gi... - gi\|218556046\|ref\|YP_002388959.1\| oligopeptidase A [Escherichia coli IAI1], gi\|218362814\|emb\|CAR00441... gi\|251786746, gi... - gi\|251786746\|ref\|YP_003001050.1\| hypothetical protein B21_03300 [Escherichia coli BL21], gi\|24237901... gi\|254163421, gi... - gi\|254163421\|ref\|YP_003046529.1\| oligopeptidase A [Escherichia coli B str. REL606], gi\|253975322\|gb\|... gi\|253322717, gi... - gi\|254290171\|ref\|YP_003055919.1\| oligopeptidase A [Escherichia coli BL21(DE3)], gi\|253979478\|gb\|ACT4... gi\|192958155, gi... - gi\|75237440\|ref\|ZP_00721473.1\| COG0339: Zn-dependent oligopeptidases [Escherichia coli E110019], gi\|...	660.0	[0..51]	[746..1]
gi\|209396642, gi... - gi\|209396642\|ref\|YP_002272964.1\| oligopeptidase A [Escherichia coli O157:H7 str. EC4115], gi\|2091580... gi\|217325564, gi... - gi\|217325564\|ref\|ZP_03441648.1\| oligopeptidase A [Escherichia coli O157:H7 str. TW14588], gi\|2173217... gi\|195935016 - gi\|195935016\|ref\|ZP_03080398.1\| oligopeptidase A [Escherichia coli O157:H7 str. EC4024] gi\|208808077, gi... - gi\|208808077\|ref\|ZP_03250414.1\| oligopeptidase A [Escherichia coli O157:H7 str. EC4206], gi\|20872787... gi\|208813633, gi... - gi\|208813633\|ref\|ZP_03254962.1\| oligopeptidase A [Escherichia coli O157:H7 str. EC4045], gi\|20873491... gi\|208739743, gi... - gi\|208819620\|ref\|ZP_03259940.1\| oligopeptidase A [Escherichia coli O157:H7 str. EC4042], gi\|20873974... gi\|168772565, gi... - gi\|187771638\|gb\|EDU35482.1\| oligopeptidase A [Escherichia coli O157:H7 str. EC4196], gi\|168772565\|re... gi\|168779626, gi... - gi\|189002260\|gb\|EDU71246.1\| oligopeptidase A [Escherichia coli O157:H7 str. EC4076], gi\|168779626\|re... gi\|189374592, gi... - gi\|189374592\|gb\|EDU93008.1\| oligopeptidase A [Escherichia coli O157:H7 str. EC869], gi\|168785348\|ref... gi\|189379996, gi... - gi\|189379996\|gb\|EDU98412.1\| oligopeptidase A [Escherichia coli O157:H7 str. EC508], gi\|168797313\|ref... gi\|168746980, gi... - gi\|188018294\|gb\|EDU56416.1\| oligopeptidase A [Escherichia coli O157:H7 str. EC4113], gi\|168746980\|re... gi\|189359131, gi... - gi\|189359131\|gb\|EDU77550.1\| oligopeptidase A [Escherichia coli O157:H7 str. EC4401], gi\|168753295\|re... gi\|13363844, gi\|... - gi\|15833624\|ref\|NP_312397.1\| oligopeptidase A [Escherichia coli O157:H7 str. Sakai], gi\|13363844\|dbj... gi\|189369485, gi... - gi\|189369485\|gb\|EDU87901.1\| oligopeptidase A [Escherichia coli O157:H7 str. EC4501], gi\|168759566\|re... gi\|168765890, gi... - gi\|189364810\|gb\|EDU83229.1\| oligopeptidase A [Escherichia coli O157:H7 str. EC4486], gi\|168765890\|re... gi\|13363844, gi\|... - gi\|15833624\|ref\|NP_312397.1\| oligopeptidase A [Escherichia coli O157:H7], gi\|13363844\|dbj\|BAB37793.1... gi\|254795441, gi... - gi\|254795441\|ref\|YP_003080278.1\| oligopeptidase A [Escherichia coli O157:H7 str. TW14359], gi\|254594... gi\|25319707, gi\|... - pir\|\|B91175 oligopeptidase A [imported] - Escherichia coli (strain O157:H7, substrain RIMD 0509952)... gi\|15804033, gi\|... - gi\|15804033\|ref\|NP_290069.1\| oligopeptidase A [Escherichia coli O157:H7 EDL933], gi\|12518192\|gb\|AAG5...	660.0	[0..51]	[746..1]
gi\|75242711, gi\|... - gi\|75242711\|ref\|ZP_00726455.1\| COG0339: Zn-dependent oligopeptidases [Escherichia coli F11], gi\|1911... gi\|110643735, gi... - gi\|110643735\|ref\|YP_671465.1\| oligopeptidase A [Escherichia coli 536], gi\|110345327\|gb\|ABG71564.1\| o...	660.0	[0..51]	[745..1]
gi\|157159202, gi... - gi\|75188265\|ref\|ZP_00701532.1\| COG0339: Zn-dependent oligopeptidases [Escherichia coli E24377A], gi\|...	660.0	[0..51]	[746..1]

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Predicted Domain #1

Region A:
Residues: [1-762]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQVRTLLTLG KKKVIGNRQC ILSLYRKYSN VQSRKAEDQL LRQIFDDQNI AVNQITKRNG  60
   61 IQGVGLFRNH FLSDKDTGFL RLAETASEKC KAVIEDLLLE DTEDGSIVVS KFDRISNLLC 120
  121 SVIDLFEFVR CAHPDKMVVM KAEEAYSYLF ELMNTLNTHQ GLYEKLKCSL QQTPTLKDTD 180
  181 PEAYTVGRVF LQDFEKSGVN LESSKRNSFV KKSSESATLG RAFFNNSMNR PQRYLTISKQ 240
  241 RLAGSDPYFV RSLSKNDKNF IMIPTVGYEG TQALISVANP DVRKEIYMEG HKGTVEEVEL 300
  301 LNSYLRSKAE VAKLVGKSSF ADLQLIDKMA NAPKHVVEFL ENLSLKNSSV LKKILNNLAL 360
  361 MKKKELNLNF LPSFDVWDRE YYTARYKQSL INQKPSLNPS ITNYRRFFSV GTVIQGLSRL 420
  421 FSSLYGLRFV PADISPGEVW HPDVNKVNVY NENDHVMGVI YFDLFARTGK TDGAAHFTIR 480
  481 SSRELDLTSF DDSISLGFDD ATNIRVKDNK RYQIPVISLL CNFVRSSGMD PTFLDLWDVK 540
  541 TLFHEMGHAM HSILGHTKYQ NLAGTRCATD FVELPSIIME FFMSNPAVLP LYARYEGTEI 600
  601 PLPVQVLNHH NMVENSSAPL DLQSQICMAM VDQLFHSKVV LDPSFNSIDE VTNVTRKFSG 660
  661 FESAPPAAWY LQFSHLYGYS ATYYSYIFDT VLASLIFSKL FAGNPLSREA GEKFRKAILR 720
  721 WGGSRSPWEC VAEALEQPIL ATGGEEAMRR IGSEGIKATS TF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	155.0
Match:	1i1iP
Description:	Neurolysin (endopeptidase 24.16)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
peptidase activity	3.61797750040144	bayes_pls_golite062009
metallopeptidase activity	3.50779710207955	bayes_pls_golite062009
metalloendopeptidase activity	3.48758651243973	bayes_pls_golite062009
endopeptidase activity	3.33212790314223	bayes_pls_golite062009
peptidase activity, acting on L-amino acid peptides	3.28672457209168	bayes_pls_golite062009
hydrolase activity	2.4180994157249	bayes_pls_golite062009
transporter activity	1.72601293225401	bayes_pls_golite062009
binding	1.55761777216628	bayes_pls_golite062009
transmembrane transporter activity	1.40574642512021	bayes_pls_golite062009
transition metal ion binding	1.38438013458016	bayes_pls_golite062009
ion binding	1.04016734747204	bayes_pls_golite062009
cation binding	0.956500682358628	bayes_pls_golite062009
metal ion binding	0.956500682358628	bayes_pls_golite062009
substrate-specific transporter activity	0.933447696036882	bayes_pls_golite062009
catalytic activity	0.891187593353827	bayes_pls_golite062009
bradykinin receptor binding	0.885174712362249	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	0.655915544358586	bayes_pls_golite062009
protein binding	0.530727556830171	bayes_pls_golite062009
ion transmembrane transporter activity	0.414956359430633	bayes_pls_golite062009
exopeptidase activity	0.364756038518376	bayes_pls_golite062009
aminopeptidase activity	0.21808506596674	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: