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View Structure Prediction Details

Protein: Rap2l-PA
Organism: Drosophila melanogaster
Length: 182 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Rap2l-PA.

Description E-value Query
Range		 Subject
Range
gi|49074732, gi|... - gi|71019563|ref|XP_760012.1| hypothetical protein UM03865.1 [Ustilago maydis 521], ref|XP_401480.1| ...
 185.0 [0..4] [167..10]
gi|18447913 - gi|18447913|dbj|BAB84322.1| ras-related protein RAB8-1 [Nicotiana tabacum]
 182.0 [0..4] [180..16]
RASH_MSVHA - Transforming protein p29 OS=Harvey murine sarcoma virus GN=H-RAS PE=1 SV=1
 182.0 [0..1] [181..53]
gi|1362066, gi|8... - gi|871510|emb|CAA90080.1| small GTP-binding protein [Pisum sativum], pir||S57471 GTP-binding protein...
 182.0 [0..4] [174..16]
gi|1370190 - gi|1370190|emb|CAA98172.1| RAB8A [Lotus japonicus]
 182.0 [0..4] [180..17]
gi|83775261 - gi|83775261|dbj|BAE65383.1| unnamed protein product [Aspergillus oryzae]
gi|169784109 - gi|169784109|ref|XP_001826516.1| hypothetical protein [Aspergillus oryzae RIB40]
 181.0 [0..4] [181..11]

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Predicted Domain #1
Region A:
Residues: [1-182] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MREFKVVVLG SGGVGKSALT VQFVSGCFIE KYDPTIEDFY RKEIEVDSSP CVLEILDTAG  60
   61 TEQFASMRDL YIKNGHGFIV MYSLTNHQTF QDISSMKNVI TRVKGSQPAP ILLVANKFDL 120
  121 DCQREVSTAE GNALAQLWDC PFIEASAKDR INVNEVFATI VREMNLTQEN RQKKNYCCCT 180
  181 LL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 40.39794
Match: 1guaA
Description: Rap1A
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
transporter activity 3.10463051760206 bayes_pls_golite062009
motor activity 3.05266971782767 bayes_pls_golite062009
transmembrane transporter activity 2.95886887664984 bayes_pls_golite062009
nucleoside-triphosphatase activity 2.95079405147356 bayes_pls_golite062009
pyrophosphatase activity 2.87427509025394 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides 2.85499564954033 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 2.85178667290149 bayes_pls_golite062009
binding 2.64537357529343 bayes_pls_golite062009
primary active transmembrane transporter activity 2.61775212528604 bayes_pls_golite062009
P-P-bond-hydrolysis-driven transmembrane transporter activity 2.61467977505707 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances 2.57552435627908 bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of substances 2.57107347424517 bayes_pls_golite062009
ATPase activity, coupled to movement of substances 2.57054427875021 bayes_pls_golite062009
active transmembrane transporter activity 2.50494515048649 bayes_pls_golite062009
ATPase activity, coupled 2.43862163407966 bayes_pls_golite062009
cytoskeletal protein binding 2.4101693596493 bayes_pls_golite062009
ATPase activity 2.39535714892224 bayes_pls_golite062009
G-protein coupled receptor activity 2.3505608190884 bayes_pls_golite062009
actin binding 2.2973522188675 bayes_pls_golite062009
microtubule motor activity 2.25100281692023 bayes_pls_golite062009
microfilament motor activity 2.22348546232108 bayes_pls_golite062009
nucleic acid binding 2.21184938313192 bayes_pls_golite062009
DNA binding 2.12258000781149 bayes_pls_golite062009
transcription regulator activity 2.09345198747025 bayes_pls_golite062009
substrate-specific transporter activity 1.91091452720653 bayes_pls_golite062009
guanyl nucleotide binding 1.89320355239381 bayes_pls_golite062009
guanyl ribonucleotide binding 1.88721318481223 bayes_pls_golite062009
GTP binding 1.87900088157196 bayes_pls_golite062009
purine ribonucleotide binding 1.85943679361938 bayes_pls_golite062009
ribonucleotide binding 1.85937484083653 bayes_pls_golite062009
purine nucleotide binding 1.8521191028835 bayes_pls_golite062009
nucleotide binding 1.84603132945448 bayes_pls_golite062009
hydrogen ion transporting ATP synthase activity, rotational mechanism 1.81972511638668 bayes_pls_golite062009
kinase activity 1.80889641165674 bayes_pls_golite062009
structural constituent of ribosome 1.80055405467543 bayes_pls_golite062009
protein transporter activity 1.71214667007262 bayes_pls_golite062009
GTPase activity 1.6309422514633 bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups 1.60386625568858 bayes_pls_golite062009
ATP binding 1.5859264197035 bayes_pls_golite062009
hydrolase activity 1.57549510726226 bayes_pls_golite062009
substrate-specific transmembrane transporter activity 1.56325751172863 bayes_pls_golite062009
adenyl ribonucleotide binding 1.55520429131224 bayes_pls_golite062009
adenyl nucleotide binding 1.53158018507951 bayes_pls_golite062009
1.5195709747438 bayes_pls_golite062009
actin filament binding 1.28204719195916 bayes_pls_golite062009
transmembrane receptor activity 1.26314334516725 bayes_pls_golite062009
protein binding 1.22129154759482 bayes_pls_golite062009
receptor activity 1.20313362488821 bayes_pls_golite062009
phosphotransferase activity, alcohol group as acceptor 1.14475274823167 bayes_pls_golite062009
signal transducer activity 1.13474466330485 bayes_pls_golite062009
molecular transducer activity 1.13474466330485 bayes_pls_golite062009
protein kinase activity 1.12864835254143 bayes_pls_golite062009
apolipoprotein A-I receptor activity 1.02132483910092 bayes_pls_golite062009
apolipoprotein receptor activity 1.02132483910092 bayes_pls_golite062009
syntaxin-13 binding 1.02132483910092 bayes_pls_golite062009
apolipoprotein A-I binding 1.02132483910092 bayes_pls_golite062009
catalytic activity 1.00104173493322 bayes_pls_golite062009
ion transmembrane transporter activity 0.977237423302079 bayes_pls_golite062009
transcription activator activity 0.889929694023098 bayes_pls_golite062009
transcription factor activity 0.887108427603557 bayes_pls_golite062009
protein methyltransferase activity 0.876296121718575 bayes_pls_golite062009
tubulin binding 0.876027506910206 bayes_pls_golite062009
transferase activity 0.871779313294914 bayes_pls_golite062009
structural molecule activity 0.86163779946438 bayes_pls_golite062009
structure-specific DNA binding 0.762584163889896 bayes_pls_golite062009
DNA-dependent ATPase activity 0.75383985982414 bayes_pls_golite062009
microtubule binding 0.698784516726237 bayes_pls_golite062009
actin-dependent ATPase activity 0.63380720407278 bayes_pls_golite062009
histone methyltransferase activity 0.63002958837536 bayes_pls_golite062009
helicase activity 0.6191010101321 bayes_pls_golite062009
cell surface binding 0.618263399939881 bayes_pls_golite062009
cation transmembrane transporter activity 0.557919489256916 bayes_pls_golite062009
sequence-specific DNA binding 0.543891899378373 bayes_pls_golite062009
double-stranded DNA binding 0.49000746592281 bayes_pls_golite062009
protein transmembrane transporter activity 0.46552249844591 bayes_pls_golite062009
hydrogen ion transmembrane transporter activity 0.444874730945263 bayes_pls_golite062009
signal sequence binding 0.42240724331108 bayes_pls_golite062009
drug transmembrane transporter activity 0.38711726712063 bayes_pls_golite062009
RNA helicase activity 0.34746349346164 bayes_pls_golite062009
protein serine/threonine kinase activity 0.345873656782869 bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity 0.325013574811283 bayes_pls_golite062009
general RNA polymerase II transcription factor activity 0.312659433116074 bayes_pls_golite062009
ATP-dependent RNA helicase activity 0.30832907234141 bayes_pls_golite062009
peptide binding 0.304703625340488 bayes_pls_golite062009
purine NTP-dependent helicase activity 0.29664013896754 bayes_pls_golite062009
ATP-dependent helicase activity 0.29664013896754 bayes_pls_golite062009
RNA-dependent ATPase activity 0.29532978396745 bayes_pls_golite062009
signal recognition particle binding 0.20866768220789 bayes_pls_golite062009
nucleobase, nucleoside, nucleotide kinase activity 0.12351419478929 bayes_pls_golite062009
inorganic cation transmembrane transporter activity 0.123304946374679 bayes_pls_golite062009
metal ion transmembrane transporter activity 0.0775601177068852 bayes_pls_golite062009
RNA binding 0.0693163519626152 bayes_pls_golite062009
structural constituent of muscle 0.0436357112276422 bayes_pls_golite062009
structural constituent of cytoskeleton 0.0111338193708552 bayes_pls_golite062009
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle