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View Structure Prediction Details

Protein: Su(var)2-10-PC
Organism: Drosophila melanogaster
Length: 565 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Su(var)2-10-PC.

Description E-value Query
Range		 Subject
Range
gi|220950582 - gi|220950582|gb|ACL87834.1| Su(var)2-10-PA [synthetic construct]
Su(var)2-10-PD - The gene Suppressor of variegation 2-10 is referred to in FlyBase by the symbol Dmel\Su(var)2-10 (CG...
 538.0 [0..2] [565..36]

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Predicted Domain #1
Region A:
Residues: [1-66] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPFPSLQECE QMVQMLRVVE LQKILSFLNI SFAGRKTDLQ SRILSFLRTN LELLAPKVQE  60
   61 VYAQSV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 17.39794
Match: 1v66A
Description: Solution structure of human p53 binding domain of PIAS-1
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
SUMO ligase activity 7.09211721404578 bayes_pls_golite062009
small conjugating protein ligase activity 5.19208367271658 bayes_pls_golite062009
acid-amino acid ligase activity 4.23914967265256 bayes_pls_golite062009
transcription regulator activity 3.41663142583782 bayes_pls_golite062009
DNA binding 3.10342439340038 bayes_pls_golite062009
nucleic acid binding 3.06883460395012 bayes_pls_golite062009
binding 2.85946414867169 bayes_pls_golite062009
transcription repressor activity 2.74753557795928 bayes_pls_golite062009
RNA polymerase II transcription factor activity 2.29668422758615 bayes_pls_golite062009
ligase activity, forming carbon-nitrogen bonds 2.24838171947021 bayes_pls_golite062009
transcription corepressor activity 2.19580341360526 bayes_pls_golite062009
transcription coactivator activity 2.00568376574074 bayes_pls_golite062009
transcription factor binding 1.87393007510949 bayes_pls_golite062009
transcription cofactor activity 1.74991817705903 bayes_pls_golite062009
steroid hormone receptor binding 1.6614513749396 bayes_pls_golite062009
hormone receptor binding 1.54663504907102 bayes_pls_golite062009
protein binding 1.4634286530239 bayes_pls_golite062009
androgen receptor binding 1.42204964058772 bayes_pls_golite062009
transcription activator activity 1.33699031660219 bayes_pls_golite062009
nuclear hormone receptor binding 1.31532203831033 bayes_pls_golite062009
chromatin binding 0.65047159761755 bayes_pls_golite062009
receptor binding 0.52768617849698 bayes_pls_golite062009
catalytic activity 0.454272578060498 bayes_pls_golite062009
ligase activity 0.36302660895622 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [67-146] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QEQNATLQYI DPTRMYSHIQ LPPTVQPNPV GLVGSGQGVQ VPGGQMNVVG GAPFLHTHSI  60
   61 NSQLPIHPDV RLKKLAFYDV

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [147-317] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LGTLIKPSTL VPRNTQRVQE VPFYFTLTPQ QATEIASNRD IRNSSKVEHA IQVQLRFCLV  60
   61 ETSCDQEDCF PPNVNVKVNN KLCQLPNVIP TNRPNVEPKR PPRPVNVTSN VKLSPTVTNT 120
  121 ITVQWCPDYT RSYCLAVYLV KKLTSTQLLQ RMKTKGVKPA DYTRGLIKEK L

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [318-412] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TEDADCEIAT TMLKVSLNCP LGKMKMLLPC RASTCSHLQC FDASLYLQMN ERKPTWNCPV  60
   61 CDKPAIYDNL VIDGYFQEVL GSSLLKSDDT EIQLH

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 9.154902
Match: 2yu4A
Description: No description for 2yu4A was found.

Predicted Domain #5
Region A:
Residues: [413-565] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QDGSWSTPGL RSETQILDTP SKPAQKVEVI SDDIELISDD AKPVKRDLSP AQDEQPTSTS  60
   61 NSETVDLTLS DSDDDMPLAK RRPPAKQAVA SSTSNGSGGG QRAYTPAQQP QQSGGNVFKK 120
  121 PQKAEELYKR VHLGVWLRPR KPKPESSRRP NVG

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle