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View Structure Prediction Details

Protein: SUV3
Organism: Saccharomyces cerevisiae
Length: 737 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SUV3.

Description E-value Query
Range
Subject
Range
SUV3 - ATP-dependent RNA helicase, component of the mitochondrial degradosome along with the RNase Dss1p; t...
SUV3_YEAST - ATP-dependent RNA helicase SUV3, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S28...
gi|190407918 - gi|190407918|gb|EDV11183.1| ATP-dependent RNA helicase SUV3, mitochondrial precursor [Saccharomyces ...
0.0 [1..737] [1..737]
SUV3_SACDO - ATP-dependent RNA helicase SUV3, mitochondrial OS=Saccharomyces douglasii GN=SUV3 PE=3 SV=1
SUV3_SACPA - ATP-dependent RNA helicase SUV3, mitochondrial OS=Saccharomyces paradoxus GN=SUV3 PE=3 SV=1
0.0 [1..737] [1..737]
Q66FY3|Q66FY3_YERPS - ATP-dependent DNA helicase - Yersinia pseudotuberculosis
gi|167048747, gi... - gi|167401854|ref|ZP_02307342.1| ATP-dependent DNA helicase RecQ [Yersinia pestis biovar Antiqua str....
gi|89104204, gi|... - gi|89104204|ref|ZP_01176754.1| COG0514: Superfamily II DNA helicase [Yersinia pestis biovar Oriental...
gi|166213635, gi... - gi|166213635|ref|ZP_02239670.1| ATP-dependent DNA helicase RecQ [Yersinia pestis biovar Antiqua str....
gi|108806187, gi... - gi|108806187|ref|YP_650103.1| ATP-dependent DNA helicase RecQ [Yersinia pestis Antiqua], gi|10877810...
gi|167054800, gi... - gi|167426281|ref|ZP_02318034.1| ATP-dependent DNA helicase RecQ [Yersinia pestis biovar Mediaevalis ...
gi|229682488, gi... - gi|229900469|ref|ZP_04515598.1| ATP-dependent DNA helicase [Yersinia pestis Nepal516], gi|229682488|...
gi|167421077, gi... - gi|167421077|ref|ZP_02312830.1| ATP-dependent DNA helicase RecQ [Yersinia pestis biovar Orientalis s...
gi|167469646 - gi|167469646|ref|ZP_02334350.1| ATP-dependent DNA helicase RecQ [Yersinia pestis FV-1]
gi|21957085, gi|... - gi|22124312|ref|NP_667735.1| ATP-dependent DNA helicase RecQ [Yersinia pestis KIM], gi|21957085|gb|A...
gi|25290798 - pir||AI0466 ATP-dependent DNA helicase (EC 3.6.1.-) [imported] - Yersinia pestis (strain CO92)
gi|51594557, gi|... - gi|51594557|ref|YP_068748.1| ATP-dependent DNA helicase RecQ [Yersinia pseudotuberculosis IP 32953],...
gi|45442967, gi|... - gi|45442967|ref|NP_994506.1| ATP-dependent DNA helicase RecQ [Yersinia pestis biovar Microtus str. 9...
gi|16123968, gi|... - gi|218930836|ref|YP_002348711.1| ATP-dependent DNA helicase RecQ [Yersinia pestis CO92], gi|16123968...
gi|162418857, gi... - gi|162418857|ref|YP_001605148.1| ATP-dependent DNA helicase RecQ [Yersinia pestis Angola], gi|162351...
gi|229706105, gi... - gi|229837162|ref|ZP_04457327.1| ATP-dependent DNA helicase [Yersinia pestis Pestoides A], gi|2297061...
gi|229695888, gi... - gi|229839522|ref|ZP_04459681.1| ATP-dependent DNA helicase [Yersinia pestis biovar Orientalis str. P...
gi|77630731, gi|... - gi|77630731|ref|ZP_00793317.1| COG0514: Superfamily II DNA helicase [Yersinia pseudotuberculosis IP ...
gi|149289417, gi... - gi|153997111|ref|ZP_02022244.1| ATP-dependent DNA helicase [Yersinia pestis CA88-4125], gi|149289417...
gi|165989444, gi... - gi|166011675|ref|ZP_02232573.1| ATP-dependent DNA helicase RecQ [Yersinia pestis biovar Antiqua str....
gi|229900085, gi... - gi|229900085|ref|ZP_04515222.1| ATP-dependent DNA helicase [Yersinia pestis biovar Orientalis str. I...
gi|145600700, gi... - gi|145600700|ref|YP_001164776.1| ATP-dependent DNA helicase RecQ [Yersinia pestis Pestoides F], gi|1...
gi|165921764, gi... - gi|165926240|ref|ZP_02222072.1| ATP-dependent DNA helicase RecQ [Yersinia pestis biovar Orientalis s...
0.0 [205..735] [13..537]
gi|153825932, gi... - gi|153825932|ref|ZP_01978599.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae MZO-2], gi|14974034...
gi|121548208, gi... - gi|121587570|ref|ZP_01677336.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae 2740-80], gi|121548...
gi|124118769, gi... - gi|153222629|ref|ZP_01953333.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae MAK 757], gi|124118...
gi|124123627, gi... - gi|153800796|ref|ZP_01955382.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae MZO-3], gi|12412362...
gi|126510885, gi... - gi|153818546|ref|ZP_01971213.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae NCTC 8457], gi|1265...
gi|126520877, gi... - gi|229509372|ref|ZP_04398855.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae B33], gi|229353687|...
gi|229369165, gi... - gi|229606510|ref|YP_002877158.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae MJ-1236], gi|22936...
gi|229346745, gi... - gi|229516319|ref|ZP_04405767.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae RC9], gi|229346745|...
gi|229350488, gi... - gi|229512489|ref|ZP_04401961.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae TMA 21], gi|2293504...
gi|229507002, gi... - gi|229507002|ref|ZP_04396510.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae BX 330286], gi|2293...
gi|227080417, gi... - gi|227080417|ref|YP_002808968.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae M66-2], gi|2270083...
gi|15640226, gi|... - gi|9654602|gb|AAF93372.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae O1 biovar El Tor str. N16...
gi|11354421 - pir||E82351 ATP-dependent DNA helicase RecQ VC0196 [imported] - Vibrio cholerae (strain N16961 serog...
gi|75830228, gi|... - gi|75830228|ref|ZP_00759510.1| COG0514: Superfamily II DNA helicase [Vibrio cholerae MO10], gi|25485...
gi|75816541, gi|... - gi|75816541|ref|ZP_00747008.1| COG0514: Superfamily II DNA helicase [Vibrio cholerae V52], gi|121728...
0.0 [185..736] [6..556]
gi|27360504, gi|... - gi|27364385|ref|NP_759913.1| ATP-dependent DNA helicase RecQ [Vibrio vulnificus CMCP6], gi|27360504|...
0.0 [201..736] [12..547]
gi|28198526, gi|... - gi|28198526|ref|NP_778840.1| ATP-dependent DNA helicase [Xylella fastidiosa Temecula1], gi|28056610|...
0.0 [209..719] [11..516]
gi|56480445, gi|... - gi|56480445|ref|NP_709628.2| ATP-dependent DNA helicase RecQ [Shigella flexneri 2a str. 301], gi|563...
gi|30064881, gi|... - gi|30064881|ref|NP_839052.1| ATP-dependent DNA helicase RecQ [Shigella flexneri 2a str. 2457T], gi|3...
0.0 [203..735] [13..537]
gi|188015421, gi... - gi|188015421|gb|EDU53543.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str. EC4113], ...
gi|168763952, gi... - gi|189365963|gb|EDU84379.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str. EC4501], ...
gi|168753724, gi... - gi|189358975|gb|EDU77394.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str. EC4401], ...
gi|187768838, gi... - gi|187768838|gb|EDU32682.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str. EC4196], ...
gi|168768108, gi... - gi|189362723|gb|EDU81142.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str. EC4486], ...
gi|83569341, gi|... - gi|83569341|ref|ZP_00920796.1| COG0514: Superfamily II DNA helicase [Shigella dysenteriae 1012], gi|...
gi|189373237, gi... - gi|189373237|gb|EDU91653.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str. EC869], g...
gi|192926687, gi... - gi|75256254|ref|ZP_00727932.1| COG0514: Superfamily II DNA helicase [Escherichia coli E22], gi|19306...
gi|168780726, gi... - gi|189001596|gb|EDU70582.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str. EC4076], ...
gi|193068067, gi... - gi|193068067|ref|ZP_03049032.1| ATP-dependent DNA helicase RecQ [Escherichia coli E110019], gi|19295...
gi|168801109, gi... - gi|189376685|gb|EDU95101.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str. EC508], g...
gi|208806062, gi... - gi|208806062|ref|ZP_03248399.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str. EC420...
gi|195938114 - gi|195938114|ref|ZP_03083496.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str. EC402...
gi|208821321, gi... - gi|208821321|ref|ZP_03261641.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str. EC404...
tr|A0A0G3HRF1|A0... - ATP-dependent DNA helicase protein OS=Escherichia coli (strain K12) GN=recQ PE=4 SV=1
gi|208812810, gi... - gi|208812810|ref|ZP_03254139.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str. EC404...
gi|217321505, gi... - gi|217325284|ref|ZP_03441368.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str. TW145...
gi|209400089, gi... - gi|209400089|ref|YP_002273341.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str. EC41...
gi|115515205, gi... - gi|117626081|ref|YP_859404.1| ATP-dependent DNA helicase RecQ [Escherichia coli APEC O1], gi|1155152...
gi|227888592, gi... - gi|227888592|ref|ZP_04006397.1| ATP-dependent DNA helicase RecQ [Escherichia coli 83972], gi|2278344...
gi|226903003, gi... - gi|237702832|ref|ZP_04533313.1| ATP-dependent DNA helicase recQ [Escherichia sp. 3_2_53FAA], gi|2269...
gi|75512622 - gi|75512622|ref|ZP_00735134.1| COG0514: Superfamily II DNA helicase [Escherichia coli 53638]
gi|209753170, gi... - pir||F86069 ATP-dependent DNA helicase [imported] - Escherichia coli (strain O157:H7, substrain EDL...
gi|15834006, gi|... - gi|15834006|ref|NP_312779.1| ATP-dependent DNA helicase [Escherichia coli O157:H7], gi|13364228|dbj|...
gi|26250563, gi|... - gi|26250563|ref|NP_756603.1| ATP-dependent DNA helicase RecQ [Escherichia coli CFT073], gi|26110993|...
gi|91074922, gi|... - gi|91213348|ref|YP_543334.1| ATP-dependent DNA helicase RecQ [Escherichia coli UTI89], gi|91074922|g...
gi|15834006, gi|... - gi|15834006|ref|NP_312779.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str. Sakai], ...
gi|15804414, gi|... - gi|15804414|ref|NP_290454.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 EDL933], gi|1...
0.0 [203..735] [13..537]
gi|15837982, gi|... - gi|9106386|gb|AAF84190.1|AE003969_7 DNA helicase [Xylella fastidiosa 9a5c], gi|15837982|ref|NP_29867...
gi|11267478 - pir||A82689 DNA helicase XF1381 [imported] - Xylella fastidiosa (strain 9a5c)
0.0 [209..736] [56..585]

Back

Predicted Domain #1
Region A:
Residues: [1-135]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALVKYSTVF FPLRSLRLFV SIKKAYYHSE PHSIDLFHDK DWIVKRPKFL NLPKNEHSKL  60
   61 DIFQFNFNKS ESNNVYLQDS SFKDNLDKAM QFIYNDKLSS LDAKQVPIKN LAWLKLRDYI 120
  121 YQQLKDPKLQ AKTYV

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [136-542]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PSVSEIIHPS SPGNLISLLI NCNKISNLVW KSVLKYSLSN NITTLDKFIH VLQQTFDHVY  60
   61 EQEILPMMTN TDDTDGAHNV DITNPAEWFP EARKIRRHII MHIGPTNSGK TYRALQKLKS 120
  121 VDRGYYAGPL RLLAREVYDR FHAEKIRCNL LTGEEVIRDL DDRGNSAGLT SGTVEMVPIN 180
  181 QKFDVVVLDE IQMMSDGDRG WAWTNALLGV VSKEVHLCGE KSVLPLVKSI VKMTGDKLTI 240
  241 NEYERLGKLS VEEKPIKDGI KGLRKGDCVV AFSKKKILDL KLKIEKDTNL KVAVIYGSLP 300
  301 PETRVQQAAL FNNGEYDIMV ASDAIGMGLN LSIDRVVFTT NMKYNGEELM EMTSSQIKQI 360
  361 GGRAGRFKSR SASGGVPQGF ITSFESKVLK SVRKAIEAPV EYLKTAV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 84.30103
Match: 1fuuA_
Description: Initiation factor 4a
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
hydrolase activity 2.18454736627863 bayes_pls_golite062009
binding 1.62320027057768 bayes_pls_golite062009
nucleic acid binding 1.02467925786178 bayes_pls_golite062009
catalytic activity 1.00104173493322 bayes_pls_golite062009
DNA binding 0.526183203901145 bayes_pls_golite062009
ribonuclease activity 0.436561333238012 bayes_pls_golite062009
transcription regulator activity 0.390949264169589 bayes_pls_golite062009
helicase activity 0.32448546535964 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides 0.22341412535263 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 0.222180491809685 bayes_pls_golite062009
pyrophosphatase activity 0.219296317139543 bayes_pls_golite062009
nucleoside-triphosphatase activity 0.194147556947887 bayes_pls_golite062009
nucleotide binding 0.114848452385726 bayes_pls_golite062009
purine nucleotide binding 0.10713474095071 bayes_pls_golite062009
purine ribonucleotide binding 0.0916519414118148 bayes_pls_golite062009
ribonucleotide binding 0.0915913646217636 bayes_pls_golite062009

Predicted Domain #3
Region A:
Residues: [543-655]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TWPTDEICAQ LMTQFPPGTP TSVLLQTISD ELEKSSDNLF TLSDLKSKLK VIGLFEHMED  60
   61 IPFFDKLKLS NAPVKDMPMV TKAFTKFCET IAKRHTRGLL SYRLPFNLLD YNC

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 7.0
Match: 1d2mA_
Description: Nucleotide excision repair enzyme UvrB
Matching Structure (courtesy of the PDB):

Predicted Domain #4
Region A:
Residues: [656-737]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IPNESYSLEV YESLYNIITL YFWLSNRYPN YFIDMESAKD LKYFCEMIIF EKLDRLKKNP  60
   61 YAHKPFGSTR GHLSSSRRRL RT

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle