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View Structure Prediction Details

Protein: YPT11
Organism: Saccharomyces cerevisiae
Length: 355 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YPT11.

Description E-value Query
Range		 Subject
Range
RAA1F_ARATH - Ras-related protein RABA1f OS=Arabidopsis thaliana GN=RABA1F PE=2 SV=1
 5.0E-84 [104..354] [6..215]
RB11B_TOBAC - Ras-related protein Rab11B OS=Nicotiana tabacum GN=RAB11B PE=2 SV=1
 2.0E-82 [104..354] [7..215]
gi|7507776 - gi|7507776|pir||T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans
 2.0E-82 [104..354] [6..215]
RB11A_LOTJA - Ras-related protein Rab11A OS=Lotus japonicus GN=RAB11A PE=2 SV=1
 2.0E-82 [95..354] [1..223]
YPT1_PHYIN - Ras-like GTP-binding protein YPT1 OS=Phytophthora infestans GN=YPT1 PE=3 SV=1
 5.0E-82 [104..317] [1..201]
RIC2_ORYSA - Ras-related protein RIC2 - Oryza sativa (Rice)
RIC2_ORYSJ - Ras-related protein RIC2 OS=Oryza sativa subsp. japonica GN=RIC2 PE=2 SV=2
gi|125555691 - gi|125555691|gb|EAZ01297.1| hypothetical protein OsI_23327 [Oryza sativa Indica Group]
 9.0E-82 [104..354] [7..215]

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Predicted Domain #1
Region A:
Residues: [1-97] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRSPSLNKSG AFGRSGSSGS STVIEPSNIK LLLIGDANVG KTAMILSYCR ELLTRAEMSR  60
   61 SARLRHQQQQ QHKDLGLKKT VVNHRLSMKE KRKRYSS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [98-355] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NDFEKEFKDI NHFADETSDF GNPNIGDDNN HEMADPNEIV IETRSTIGID IKTNLVNIDN  60
   61 RFFNVILWDT AGQERYQNAI IPSLYKKTNA VILTYDITNA KSFQSCMERW IVQALENFSS 120
  121 QDLLKARFFL VGNKIDLYKE RQVTHYDVVQ MVQEMQLKHG IKISGNFEVS CKWVNVVERT 180
  181 MNMIILDLVE NGCFENNDPC VSITTSDDVQ GHEQEFHDTV EEPFNFTRQR QHQLEKNNTV 240
  241 DITKPNDDIA NNQSICCV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 187.741366
Match: 1d5cA_
Description: Rab6
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
hydrolase activity 2.65461298232951 bayes_pls_golite062009
nucleoside-triphosphatase activity 2.28726855139279 bayes_pls_golite062009
pyrophosphatase activity 2.23754609668547 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides 2.21702600128327 bayes_pls_golite062009
binding 2.21604035604783 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 2.21503003850174 bayes_pls_golite062009
guanyl nucleotide binding 1.89320355239381 bayes_pls_golite062009
guanyl ribonucleotide binding 1.88721318481223 bayes_pls_golite062009
GTP binding 1.87900088157196 bayes_pls_golite062009
transporter activity 1.85044926113762 bayes_pls_golite062009
ATPase activity 1.70670922135201 bayes_pls_golite062009
transmembrane transporter activity 1.656935231793 bayes_pls_golite062009
GTPase activity 1.23010905798386 bayes_pls_golite062009
ATPase activity, coupled 1.02588328213159 bayes_pls_golite062009
purine nucleotide binding 0.929901285538132 bayes_pls_golite062009
nucleotide binding 0.922442819194247 bayes_pls_golite062009
purine ribonucleotide binding 0.920987930180051 bayes_pls_golite062009
ribonucleotide binding 0.920926158369519 bayes_pls_golite062009
substrate-specific transporter activity 0.464456497491373 bayes_pls_golite062009
active transmembrane transporter activity 0.434775387083003 bayes_pls_golite062009
ATP binding 0.41092997612902 bayes_pls_golite062009
adenyl ribonucleotide binding 0.385813421701492 bayes_pls_golite062009
adenyl nucleotide binding 0.377870145186619 bayes_pls_golite062009
primary active transmembrane transporter activity 0.294474570607914 bayes_pls_golite062009
signal recognition particle binding 0.29390189699022 bayes_pls_golite062009
P-P-bond-hydrolysis-driven transmembrane transporter activity 0.282352478532746 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances 0.220608508617331 bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of substances 0.219533217661421 bayes_pls_golite062009
ATPase activity, coupled to movement of substances 0.219157471322311 bayes_pls_golite062009
nucleic acid binding 0.194779852865789 bayes_pls_golite062009
protein binding 0.170837278876362 bayes_pls_golite062009
substrate-specific transmembrane transporter activity 0.0756212238097211 bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of ions 0.0642886745104496 bayes_pls_golite062009
motor activity 0.0492172159259601 bayes_pls_golite062009
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle