Protein: | YPT11 |
Organism: | Saccharomyces cerevisiae |
Length: | 355 amino acids |
Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YPT11.
Description | E-value | Query Range |
Subject Range |
|
5.0E-84 | [104..354] | [6..215] |
|
2.0E-82 | [104..354] | [7..215] |
|
2.0E-82 | [104..354] | [6..215] |
|
2.0E-82 | [95..354] | [1..223] |
|
5.0E-82 | [104..317] | [1..201] |
|
9.0E-82 | [104..354] | [7..215] |
Region A: Residues: [1-97] |
1 11 21 31 41 51 | | | | | | 1 MRSPSLNKSG AFGRSGSSGS STVIEPSNIK LLLIGDANVG KTAMILSYCR ELLTRAEMSR 60 61 SARLRHQQQQ QHKDLGLKKT VVNHRLSMKE KRKRYSS |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
MCM Score |
SCOP Match |
SCOP Description | ||
View | Download | 0.460 | b.55.1 | PH domain-like |
View | Download | 0.351 | b.40.4 | Nucleic acid-binding proteins |
View | Download | 0.322 | a.85.1 | Hemocyanin, N-terminal domain |
View | Download | 0.334 | d.87.1 | FAD/NAD-linked reductases, dimerisation (C-terminal) domain |
View | Download | 0.330 | b.55.1 | PH domain-like |
View | Download | 0.311 | b.15.1 | HSP20-like chaperones |
View | Download | 0.310 | d.16.1 | FAD-linked reductases, C-terminal domain |
View | Download | 0.308 | d.50.1 | dsRNA-binding domain-like |
View | Download | 0.308 | b.40.4 | Nucleic acid-binding proteins |
View | Download | 0.305 | d.14.1 | Ribosomal protein S5 domain 2-like |
View | Download | 0.291 | d.110.4 | SNARE-like |
View | Download | 0.289 | d.50.2 | Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain |
View | Download | 0.280 | d.9.1 | Interleukin 8-like chemokines |
View | Download | 0.266 | b.55.1 | PH domain-like |
View | Download | 0.260 | b.71.1 | Glycosyl hydrolase domain |
View | Download | 0.258 | d.82.2 | Frataxin-like |
View | Download | 0.254 | d.87.1 | FAD/NAD-linked reductases, dimerisation (C-terminal) domain |
View | Download | 0.239 | g.52.1 | Inhibitor of apoptosis (IAP) repeat |
View | Download | 0.238 | c.58.1 | Aminoacid dehydrogenase-like, N-terminal domain |
View | Download | 0.229 | d.15.1 | Ubiquitin-like |
View | Download | 0.228 | d.108.1 | Acyl-CoA N-acyltransferases (Nat) |
View | Download | 0.228 | c.55.7 | Methylated DNA-protein cysteine methyltransferase domain |
View | Download | 0.223 | d.93.1 | SH2 domain |
View | Download | 0.218 | b.40.4 | Nucleic acid-binding proteins |
View | Download | 0.215 | a.46.1 | Methionine synthase domain |
View | Download | 0.212 | c.55.3 | Ribonuclease H-like |
View | Download | 0.207 | d.49.1 | Signal recognition particle alu RNA binding heterodimer, SRP9/14 |
View | Download | 0.202 | d.16.1 | FAD-linked reductases, C-terminal domain |
View | Download | 0.201 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
Region A: Residues: [98-355] |
1 11 21 31 41 51 | | | | | | 1 NDFEKEFKDI NHFADETSDF GNPNIGDDNN HEMADPNEIV IETRSTIGID IKTNLVNIDN 60 61 RFFNVILWDT AGQERYQNAI IPSLYKKTNA VILTYDITNA KSFQSCMERW IVQALENFSS 120 121 QDLLKARFFL VGNKIDLYKE RQVTHYDVVQ MVQEMQLKHG IKISGNFEVS CKWVNVVERT 180 181 MNMIILDLVE NGCFENNDPC VSITTSDDVQ GHEQEFHDTV EEPFNFTRQR QHQLEKNNTV 240 241 DITKPNDDIA NNQSICCV |
Detection Method: | |
Confidence: | 187.741366 |
Match: | 1d5cA_ |
Description: | Rab6 |
Matching Structure (courtesy of the PDB): |
Term | Confidence | Notes |
hydrolase activity | 2.65461298232951 | bayes_pls_golite062009 |
nucleoside-triphosphatase activity | 2.28726855139279 | bayes_pls_golite062009 |
pyrophosphatase activity | 2.23754609668547 | bayes_pls_golite062009 |
hydrolase activity, acting on acid anhydrides | 2.21702600128327 | bayes_pls_golite062009 |
binding | 2.21604035604783 | bayes_pls_golite062009 |
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | 2.21503003850174 | bayes_pls_golite062009 |
guanyl nucleotide binding | 1.89320355239381 | bayes_pls_golite062009 |
guanyl ribonucleotide binding | 1.88721318481223 | bayes_pls_golite062009 |
GTP binding | 1.87900088157196 | bayes_pls_golite062009 |
transporter activity | 1.85044926113762 | bayes_pls_golite062009 |
ATPase activity | 1.70670922135201 | bayes_pls_golite062009 |
transmembrane transporter activity | 1.656935231793 | bayes_pls_golite062009 |
GTPase activity | 1.23010905798386 | bayes_pls_golite062009 |
ATPase activity, coupled | 1.02588328213159 | bayes_pls_golite062009 |
purine nucleotide binding | 0.929901285538132 | bayes_pls_golite062009 |
nucleotide binding | 0.922442819194247 | bayes_pls_golite062009 |
purine ribonucleotide binding | 0.920987930180051 | bayes_pls_golite062009 |
ribonucleotide binding | 0.920926158369519 | bayes_pls_golite062009 |
substrate-specific transporter activity | 0.464456497491373 | bayes_pls_golite062009 |
active transmembrane transporter activity | 0.434775387083003 | bayes_pls_golite062009 |
ATP binding | 0.41092997612902 | bayes_pls_golite062009 |
adenyl ribonucleotide binding | 0.385813421701492 | bayes_pls_golite062009 |
adenyl nucleotide binding | 0.377870145186619 | bayes_pls_golite062009 |
primary active transmembrane transporter activity | 0.294474570607914 | bayes_pls_golite062009 |
signal recognition particle binding | 0.29390189699022 | bayes_pls_golite062009 |
P-P-bond-hydrolysis-driven transmembrane transporter activity | 0.282352478532746 | bayes_pls_golite062009 |
hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances | 0.220608508617331 | bayes_pls_golite062009 |
ATPase activity, coupled to transmembrane movement of substances | 0.219533217661421 | bayes_pls_golite062009 |
ATPase activity, coupled to movement of substances | 0.219157471322311 | bayes_pls_golite062009 |
nucleic acid binding | 0.194779852865789 | bayes_pls_golite062009 |
protein binding | 0.170837278876362 | bayes_pls_golite062009 |
substrate-specific transmembrane transporter activity | 0.0756212238097211 | bayes_pls_golite062009 |
ATPase activity, coupled to transmembrane movement of ions | 0.0642886745104496 | bayes_pls_golite062009 |
motor activity | 0.0492172159259601 | bayes_pls_golite062009 |