| Protein: | LIP2 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 328 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LIP2.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..328] | [1..328] |
|
|
2.0E-99 | [10..323] | [19..329] |
|
|
3.0E-79 | [27..314] | [13..264] |
|
|
1.0E-70 | [80..324] | [53..278] |
|
|
6.0E-67 | [91..310] | [15..207] |
|
|
8.0E-67 | [44..314] | [18..250] |
|
|
8.0E-67 | [79..310] | [2..213] |
|
|
8.0E-67 | [41..310] | [2..234] |
|
|
3.0E-66 | [55..311] | [40..260] |
|
Region A: Residues: [1-109] |
1 11 21 31 41 51
| | | | | |
1 MSRCIRQSVC TNFNVCRRQC FSTYASALKE MTHPIKPSAQ TLRHLQFTQR IPFQKGLEIQ 60
61 ETLVRANLDI KDIQSKIERK LIQLDEEYKG TATINDNEKR ILDKVMAMK
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.523 | 0.219 | mitochondrion | a.23.4 | Mitochondrial import receptor subunit Tom20 |
| View | Download | 0.665 | 0.004 | ligase activity | a.74.1 | Cyclin-like |
| View | Download | 0.445 | 0.001 | ligase activity | a.4.12 | TrpR-like |
| View | Download | 0.484 | 0.001 | ligase activity | d.58.20 | NAD-binding domain of HMG-CoA reductase |
| View | Download | 0.665 | N/A | N/A | a.74.1 | Cyclin-like |
| View | Download | 0.523 | N/A | N/A | a.23.4 | Mitochondrial import receptor subunit Tom20 |
| View | Download | 0.484 | N/A | N/A | d.58.20 | NAD-binding domain of HMG-CoA reductase |
| View | Download | 0.445 | N/A | N/A | a.4.12 | TrpR-like |
| View | Download | 0.435 | N/A | N/A | d.146.1 | Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain |
| View | Download | 0.435 | N/A | N/A | d.146.1 | Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain |
| View | Download | 0.405 | N/A | N/A | a.4.6 | C-terminal effector domain of the bipartite response regulators |
| View | Download | 0.389 | N/A | N/A | a.74.1 | Cyclin-like |
| View | Download | 0.330 | N/A | N/A | a.60.6 | DNA polymerase beta, N-terminal domain-like |
| View | Download | 0.324 | N/A | N/A | a.1.1 | Globin-like |
| View | Download | 0.311 | N/A | N/A | d.129.4 | Cell-division protein ZipA, C-terminal domain |
| View | Download | 0.310 | N/A | N/A | a.60.11 | Hypothetical protein YjbJ |
| View | Download | 0.309 | N/A | N/A | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
| View | Download | 0.308 | N/A | N/A | a.74.1 | Cyclin-like |
| View | Download | 0.306 | N/A | N/A | a.71.1 | Endoplasmic reticulum protein ERP29, C-domain |
| View | Download | 0.285 | N/A | N/A | a.4.1 | Homeodomain-like |
| View | Download | 0.282 | N/A | N/A | a.60.10 | Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain |
| View | Download | 0.278 | N/A | N/A | a.23.4 | Mitochondrial import receptor subunit Tom20 |
| View | Download | 0.269 | N/A | N/A | a.1.1 | Globin-like |
| View | Download | 0.268 | N/A | N/A | a.74.1 | Cyclin-like |
| View | Download | 0.268 | N/A | N/A | a.24.7 | FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) |
| View | Download | 0.266 | N/A | N/A | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
| View | Download | 0.261 | N/A | N/A | a.81.1 | N-terminal domain of DnaB helicase |
| View | Download | 0.259 | N/A | N/A | d.58.43 | Mechanosensitive channel protein MscS (YggB), C-terminal domain |
| View | Download | 0.255 | N/A | N/A | a.24.17 | Group V grass pollen allergen |
| View | Download | 0.253 | N/A | N/A | a.1.1 | Globin-like |
| View | Download | 0.246 | N/A | N/A | a.118.8 | TPR-like |
| View | Download | 0.241 | N/A | N/A | a.24.17 | Group V grass pollen allergen |
| View | Download | 0.235 | N/A | N/A | a.5.3 | N-terminal domain of phosphatidylinositol transfer protein sec14p |
| View | Download | 0.232 | N/A | N/A | a.69.1 | C-terminal domain of alpha and beta subunits of F1 ATP synthase |
| View | Download | 0.230 | N/A | N/A | a.29.2 | Bromodomain |
| View | Download | 0.230 | N/A | N/A | d.58.18 | Regulatory domain in the aminoacid metabolism |
| View | Download | 0.230 | N/A | N/A | f.14.1 | Voltage-gated potassium channels |
| View | Download | 0.226 | N/A | N/A | a.74.1 | Cyclin-like |
| View | Download | 0.220 | N/A | N/A | c.30.1 | PreATP-grasp domain |
| View | Download | 0.209 | N/A | N/A | a.39.3 | Cloroperoxidase |
| View | Download | 0.209 | N/A | N/A | c.59.1 | MurD-like peptide ligases, peptide-binding domain |
| View | Download | 0.209 | N/A | N/A | a.1.1 | Globin-like |
| View | Download | 0.209 | N/A | N/A | a.26.1 | 4-helical cytokines |
| View | Download | 0.206 | N/A | N/A | d.110.4 | SNARE-like |
| View | Download | 0.202 | N/A | N/A | d.43.1 | Elongation factor Ts (EF-Ts), dimerisation domain |
| View | Download | 0.201 | N/A | N/A | a.69.1 | C-terminal domain of alpha and beta subunits of F1 ATP synthase |
|
Region A: Residues: [110-267] |
1 11 21 31 41 51
| | | | | |
1 PNPIILTFEF EPTYTGGKRI KKTMTPDQIA AYESFIPETQ KDNPRPKFVQ VERGGQVTFH 60
61 GPGQIVIYII LDLKTFQSFP AKCLVSCIEQ ATIRTLKNTK MCDDTDKPLN LDAMTTKDTG 120
121 VWVENGKKKV ASVGIHVRRS ITSHGVAINV NTDLSYMN
|
| Detection Method: | |
| Confidence: | 30.481486 |
| Match: | PF03099 |
| Description: | Biotin/lipoate A/B protein ligase family |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
| Term | Confidence | Notes |
| aminoacyl-tRNA ligase activity | 4.83057889638134 | bayes_pls_golite062009 |
| ligase activity, forming aminoacyl-tRNA and related compounds | 4.8294067084702 | bayes_pls_golite062009 |
| ligase activity, forming carbon-oxygen bonds | 4.8294067084702 | bayes_pls_golite062009 |
| ligase activity | 3.51191116674556 | bayes_pls_golite062009 |
| catalytic activity | 1.99372273395202 | bayes_pls_golite062009 |
| phenylalanine-tRNA ligase activity | 1.57827239765705 | bayes_pls_golite062009 |
| serine-tRNA ligase activity | 1.07048505740004 | bayes_pls_golite062009 |
| glycine-tRNA ligase activity | 0.91005913703893 | bayes_pls_golite062009 |
| threonine-tRNA ligase activity | 0.793195358470619 | bayes_pls_golite062009 |
| binding | 0.521863822270226 | bayes_pls_golite062009 |
| alanine-tRNA ligase activity | 0.435766663027965 | bayes_pls_golite062009 |
| histidine-tRNA ligase activity | 0.334773354741163 | bayes_pls_golite062009 |
| lysine-tRNA ligase activity | 0.333541891861949 | bayes_pls_golite062009 |
| nucleic acid binding | 0.281662799812287 | bayes_pls_golite062009 |
| ATP binding | 0.18403217430648 | bayes_pls_golite062009 |
| adenyl ribonucleotide binding | 0.145955341735342 | bayes_pls_golite062009 |
| transcription regulator activity | 0.134753238769136 | bayes_pls_golite062009 |
| adenyl nucleotide binding | 0.127823774098159 | bayes_pls_golite062009 |
| DNA binding | 0.0309732052586011 | bayes_pls_golite062009 |
| protein binding | 0.0101455326199739 | bayes_pls_golite062009 |
|
Region A: Residues: [268-328] |
1 11 21 31 41 51
| | | | | |
1 SFEMCGLKNT LTTSIMEQRP DAVVNVQSVA ISFVKEMTKL LGIKTLERMQ IDDVNILKKN 60
61 P
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.860 | 0.820 | ligase activity | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.695 | 0.012 | ligase activity | a.4.1 | Homeodomain-like |
| View | Download | 0.775 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.595 | N/A | N/A | a.4.1 | Homeodomain-like |
| View | Download | 0.575 | N/A | N/A | a.74.1 | Cyclin-like |
| View | Download | 0.521 | N/A | N/A | a.4.1 | Homeodomain-like |
| View | Download | 0.500 | N/A | N/A | a.5.1 | DNA helicase RuvA subunit, C-terminal domain |
| View | Download | 0.471 | N/A | N/A | a.4.1 | Homeodomain-like |
| View | Download | 0.455 | N/A | N/A | a.4.1 | Homeodomain-like |
| View | Download | 0.455 | N/A | N/A | a.74.1 | Cyclin-like |
| View | Download | 0.414 | N/A | N/A | d.43.1 | Elongation factor Ts (EF-Ts), dimerisation domain |
| View | Download | 0.412 | N/A | N/A | a.74.1 | Cyclin-like |
| View | Download | 0.405 | N/A | N/A | a.4.1 | Homeodomain-like |
| View | Download | 0.372 | N/A | N/A | a.3.1 | Cytochrome c |
| View | Download | 0.370 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.364 | N/A | N/A | d.205.1 | GTP cyclohydrolase I feedback regulatory protein, GFRP |
| View | Download | 0.362 | N/A | N/A | a.4.1 | Homeodomain-like |
| View | Download | 0.348 | N/A | N/A | a.17.1 | p8-MTCP1 |
| View | Download | 0.345 | N/A | N/A | a.112.1 | Description not found. |
| View | Download | 0.336 | N/A | N/A | a.179.1 | Replisome organizer (g39p helicase loader/inhibitor protein) |
| View | Download | 0.330 | N/A | N/A | a.22.1 | Histone-fold |
| View | Download | 0.317 | N/A | N/A | a.144.1 | PABC (PABP) domain |
| View | Download | 0.312 | N/A | N/A | a.8.1 | Bacterial immunoglobulin/albumin-binding domains |
| View | Download | 0.312 | N/A | N/A | a.8.1 | Bacterial immunoglobulin/albumin-binding domains |
| View | Download | 0.308 | N/A | N/A | a.4.1 | Homeodomain-like |
| View | Download | 0.306 | N/A | N/A | d.68.3 | SirA-like |
| View | Download | 0.306 | N/A | N/A | d.15.7 | Immunoglobulin-binding domains |
| View | Download | 0.299 | N/A | N/A | a.4.1 | Homeodomain-like |
| View | Download | 0.295 | N/A | N/A | d.15.7 | Immunoglobulin-binding domains |
| View | Download | 0.294 | N/A | N/A | d.68.3 | SirA-like |
| View | Download | 0.291 | N/A | N/A | a.4.1 | Homeodomain-like |
| View | Download | 0.290 | N/A | N/A | a.2.3 | Chaperone J-domain |
| View | Download | 0.288 | N/A | N/A | a.126.1 | Serum albumin-like |
| View | Download | 0.285 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.285 | N/A | N/A | a.5.6 | Hypothetical protein MTH1615 |
| View | Download | 0.280 | N/A | N/A | a.112.1 | Description not found. |
| View | Download | 0.278 | N/A | N/A | a.3.1 | Cytochrome c |
| View | Download | 0.276 | N/A | N/A | a.12.1 | Kix domain of CBP (creb binding protein) |
| View | Download | 0.275 | N/A | N/A | a.5.2 | UBA-like |
| View | Download | 0.266 | N/A | N/A | a.4.1 | Homeodomain-like |
| View | Download | 0.263 | N/A | N/A | a.4.1 | Homeodomain-like |
| View | Download | 0.263 | N/A | N/A | a.112.1 | Description not found. |
| View | Download | 0.261 | N/A | N/A | d.58.10 | Acylphosphatase-like |
| View | Download | 0.260 | N/A | N/A | a.28.1 | ACP-like |
| View | Download | 0.255 | N/A | N/A | d.15.7 | Immunoglobulin-binding domains |
| View | Download | 0.252 | N/A | N/A | d.43.1 | Elongation factor Ts (EF-Ts), dimerisation domain |
| View | Download | 0.250 | N/A | N/A | c.55.4 | Translational machinery components |
| View | Download | 0.246 | N/A | N/A | a.112.1 | Description not found. |
| View | Download | 0.243 | N/A | N/A | a.4.1 | Homeodomain-like |
| View | Download | 0.230 | N/A | N/A | d.68.3 | SirA-like |
| View | Download | 0.227 | N/A | N/A | c.55.4 | Translational machinery components |
| View | Download | 0.223 | N/A | N/A | d.29.1 | Ribosomal protein L31e |
| View | Download | 0.223 | N/A | N/A | d.68.3 | SirA-like |
| View | Download | 0.222 | N/A | N/A | d.15.7 | Immunoglobulin-binding domains |
| View | Download | 0.222 | N/A | N/A | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.218 | N/A | N/A | a.58.1 | Chemotaxis receptor methyltransferase CheR, N-terminal domain |
| View | Download | 0.216 | N/A | N/A | a.58.1 | Chemotaxis receptor methyltransferase CheR, N-terminal domain |
| View | Download | 0.214 | N/A | N/A | a.74.1 | Cyclin-like |
| View | Download | 0.213 | N/A | N/A | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.213 | N/A | N/A | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.211 | N/A | N/A | d.15.7 | Immunoglobulin-binding domains |
| View | Download | 0.211 | N/A | N/A | d.58.11 | EF-G/eEF-2 domains III and V |
| View | Download | 0.210 | N/A | N/A | a.3.1 | Cytochrome c |
| View | Download | 0.209 | N/A | N/A | a.126.1 | Serum albumin-like |
| View | Download | 0.209 | N/A | N/A | a.16.1 | S15/NS1 RNA-binding domain |
| View | Download | 0.209 | N/A | N/A | a.20.1 | PGBD-like |
| View | Download | 0.208 | N/A | N/A | a.29.2 | Bromodomain |
| View | Download | 0.206 | N/A | N/A | a.32.1 | Transcription factor IIA (TFIIA), alpha-helical domain |
| View | Download | 0.203 | N/A | N/A | d.58.10 | Acylphosphatase-like |
