| Protein: | RAD26 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 1085 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RAD26.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..1085] | [1..1085] |
|
|
0.0 | [4..1083] | [448..1523] |
|
|
0.0 | [4..1083] | [446..1507] |
|
|
0.0 | [4..1083] | [447..1489] |
|
|
0.0 | [4..1083] | [447..1489] |
|
Region A: Residues: [1-285] |
1 11 21 31 41 51
| | | | | |
1 MEDKEQQDNA KLENNESLKD LGVNVLSQSS LEEKIANDVT NFSNLQSLQQ EETRLERSKT 60
61 ALQRYVNKKN HLTRKLNNTT RISVKQNLRD QIKNLQSDDI ERVLKDIDDI QSRIKELKEQ 120
121 VDQGAENKGS KEGLQRPGET EKEFLIRTGK ITAFGHKAGF SLDTANREYA KNDEQKDEDF 180
181 EMATEQMVEN LTDEDDNLSD QDYQMSGKES EDDEEEENDD KILKELEDLR FRGQPGEAKD 240
241 DGDELYYQER LKKWVKQRSC GSQRSSDLPE WRRPHPNIPD AKLNS
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [286-600] |
1 11 21 31 41 51
| | | | | |
1 QFKIPGEIYS LLFNYQKTCV QWLYELYQQN CGGIIGDEMG LGKTIQVIAF IAALHHSGLL 60
61 TGPVLIVCPA TVMKQWCNEF QHWWPPLRTV ILHSMGSGMA SDQKFKMDEN DLENLIMNSK 120
121 PSDFSYEDWK NSTRTKKALE SSYHLDKLID KVVTDGHILI TTYVGLRIHS DKLLKVKWQY 180
181 AVLDEGHKIR NPDSEISLTC KKLKTHNRII LSGTPIQNNL TELWSLFDFI FPGKLGTLPV 240
241 FQQQFVIPIN IGGYANATNI QVQTGYKCAV ALRDLISPYL LRRVKADVAK DLPQKKEMVL 300
301 FCKLTKYQRS KYLEF
|
| Detection Method: | |
| Confidence: | 112.79588 |
| Match: | PF00176 |
| Description: | SNF2 family N-terminal domain |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
| Term | Confidence | Notes |
| transcription regulator activity | 3.2394894333307 | bayes_pls_golite062009 |
| binding | 3.06758476214113 | bayes_pls_golite062009 |
| chromatin binding | 2.9265077396229 | bayes_pls_golite062009 |
| protein binding | 2.66728689880621 | bayes_pls_golite062009 |
| transcription repressor activity | 2.35473783647299 | bayes_pls_golite062009 |
| nucleic acid binding | 1.7870619298179 | bayes_pls_golite062009 |
| DNA binding | 1.72304410722296 | bayes_pls_golite062009 |
| histone binding | 1.48525673080866 | bayes_pls_golite062009 |
| transcription activator activity | 1.1132810573451 | bayes_pls_golite062009 |
| methylated histone residue binding | 0.32228411301259 | bayes_pls_golite062009 |
| catalytic activity | 0.14067200158938 | bayes_pls_golite062009 |
|
Region A: Residues: [601-770] |
1 11 21 31 41 51
| | | | | |
1 LHSSDLNQIQ NGKRNVLFGI DILRKICNHP DLLDRDTKRH NPDYGDPKRS GKMQVVKQLL 60
61 LLWHKQGYKA LLFTQSRQML DILEEFISTK DPDLSHLNYL RMDGTTNIKG RQSLVDRFNN 120
121 ESFDVFLLTT RVGGLGVNLT GANRIIIFDP DWNPSTDMQA RERAWRIGQK
|
| Detection Method: | |
| Confidence: | 3.69897 |
| Match: | 1hv8A_ |
| Description: | Putative DEAD box RNA helicase |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.64537357529343 | bayes_pls_golite062009 |
| nucleic acid binding | 2.11222585187695 | bayes_pls_golite062009 |
| nucleoside-triphosphatase activity | 2.02893949194171 | bayes_pls_golite062009 |
| pyrophosphatase activity | 1.97909493766908 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides | 1.95844964816653 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | 1.95658009428828 | bayes_pls_golite062009 |
| DNA binding | 1.7904783386531 | bayes_pls_golite062009 |
| transcription regulator activity | 1.68903321260301 | bayes_pls_golite062009 |
| ATPase activity | 1.42257610975945 | bayes_pls_golite062009 |
| protein binding | 1.22129154759482 | bayes_pls_golite062009 |
| DNA-dependent ATPase activity | 1.2155186842031 | bayes_pls_golite062009 |
| helicase activity | 1.16085745407703 | bayes_pls_golite062009 |
| catalytic activity | 1.00104173493322 | bayes_pls_golite062009 |
| hydrolase activity | 0.98565595572967 | bayes_pls_golite062009 |
| ATPase activity, coupled | 0.732723553251109 | bayes_pls_golite062009 |
| DNA helicase activity | 0.72881469450553 | bayes_pls_golite062009 |
| purine nucleotide binding | 0.725611289205392 | bayes_pls_golite062009 |
| structure-specific DNA binding | 0.720649395550746 | bayes_pls_golite062009 |
| nucleotide binding | 0.717697610309727 | bayes_pls_golite062009 |
| purine ribonucleotide binding | 0.713814218071151 | bayes_pls_golite062009 |
| ribonucleotide binding | 0.713752628021599 | bayes_pls_golite062009 |
| transcription factor activity | 0.603758349693077 | bayes_pls_golite062009 |
| ATP-dependent helicase activity | 0.59513742813869 | bayes_pls_golite062009 |
| purine NTP-dependent helicase activity | 0.59513742813869 | bayes_pls_golite062009 |
| double-stranded DNA binding | 0.58862275163252 | bayes_pls_golite062009 |
| transcription activator activity | 0.537911793669378 | bayes_pls_golite062009 |
| GTPase activity | 0.437665353870877 | bayes_pls_golite062009 |
| structural constituent of ribosome | 0.396187998943318 | bayes_pls_golite062009 |
| microtubule motor activity | 0.38363601832205 | bayes_pls_golite062009 |
| translation regulator activity | 0.29096092258568 | bayes_pls_golite062009 |
| translation factor activity, nucleic acid binding | 0.274994961137851 | bayes_pls_golite062009 |
| ATP-dependent DNA helicase activity | 0.22150712609541 | bayes_pls_golite062009 |
| ATP binding | 0.19169045543599 | bayes_pls_golite062009 |
| adenyl ribonucleotide binding | 0.165732470448462 | bayes_pls_golite062009 |
| adenyl nucleotide binding | 0.162060759063149 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 0.144154288308693 | bayes_pls_golite062009 |
| active transmembrane transporter activity | 0.114463153989353 | bayes_pls_golite062009 |
| motor activity | 0.0492172159259601 | bayes_pls_golite062009 |
|
Region A: Residues: [771-958] |
1 11 21 31 41 51
| | | | | |
1 REVSIYRLMV GGSIEEKIYH RQIFKQFLTN RILTDPKQKR FFKIHELHDL FSLGGENGYS 60
61 TEELNEEVQK HTENLKNSKS EESDDFEQLV NLSGVSKLES FYNGKEKKEN SKTEDDRLIE 120
121 GLLGGESNLE TVMSHDSVVN SHAGSSSSNI ITKEASRVAI EAVNALRKSR KKITKQYEIG 180
181 TPTWTGRF
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [959-1085] |
1 11 21 31 41 51
| | | | | |
1 GKAGKIRKRD PLKNKLTGSA AILGNITKSQ KEASKEARQE NYDDGITFAR SKEINSNTKT 60
61 LENIRAYLQK QNNFFSSSVS ILNSIGVSLS DKEDVIKVRA LLKTIAQFDK ERKGWVLDEE 120
121 FRNNNAS
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
