| Protein: | SLX8 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 274 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SLX8.
| Description | E-value | Query Range |
Subject Range |
|
|
7.0E-44 | [1..264] | [1..264] |
|
|
2.0E-33 | [1..268] | [40..311] |
|
|
1.0E-30 | [1..263] | [654..900] |
|
|
7.0E-27 | [1..263] | [358..605] |
|
|
1.0E-26 | [9..253] | [382..609] |
|
Region A: Residues: [1-198] |
1 11 21 31 41 51
| | | | | |
1 MARRPDNQNP EGENLRIKRV RLESVRQNDE EEENEVSRTQ NIVTDNRHDS PEAVVEIIGE 60
61 RALENTSEED GDDDLSLFRA LEEDPGSDHN TSNNDSGNHD RETMHTEEPE ASSGNNITLT 120
121 NNVEELHTMD VLSQTANTPS ASPMLDAAPP TTKPGTNSKE QTVDLTADAI DLDAEEQQVL 180
181 QISDDDFQEE TKEAPKEY
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [199-274] |
1 11 21 31 41 51
| | | | | |
1 GAAKDYRCPI CFEPPETALM TLCGHVFCCP CLFQMVNSSR TCRQFGHCAL CRSKVYLKDV 60
61 RLIILRKKQV KKKVKS
|
| Detection Method: | |
| Confidence: | 42.30103 |
| Match: | 1jm7A_ |
| Description: | brca1 RING domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| ubiquitin-protein ligase activity | 10.2497392096259 | bayes_pls_golite062009 |
| small conjugating protein ligase activity | 10.0460587929138 | bayes_pls_golite062009 |
| acid-amino acid ligase activity | 8.99384576623969 | bayes_pls_golite062009 |
| ligase activity, forming carbon-nitrogen bonds | 7.6988425139962 | bayes_pls_golite062009 |
| ligase activity | 3.92677358871643 | bayes_pls_golite062009 |
| binding | 2.58862749918018 | bayes_pls_golite062009 |
| protein binding | 1.49775478023418 | bayes_pls_golite062009 |
| small conjugating protein-specific protease activity | 1.2126425713931 | bayes_pls_golite062009 |
| ubiquitin-specific protease activity | 1.03469202541773 | bayes_pls_golite062009 |
| transcription regulator activity | 0.919313413645213 | bayes_pls_golite062009 |
| nucleic acid binding | 0.894017701424745 | bayes_pls_golite062009 |
| DNA binding | 0.588609879350932 | bayes_pls_golite062009 |
| cysteine-type peptidase activity | 0.50197530717959 | bayes_pls_golite062009 |
| ubiquitin thiolesterase activity | 0.265769062717221 | bayes_pls_golite062009 |
| transcription factor binding | 0.14168789797081 | bayes_pls_golite062009 |
| catalytic activity | 0.14112008370434 | bayes_pls_golite062009 |
