YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30259331, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	276 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30259331, gi|....

Description	E-value	Query Range	Subject Range
FPG_BACLD - Formamidopyrimidine-DNA glycosylase OS=Bacillus licheniformis (strain ATCC 14580 / DSM 13 / JCM 2505...	0.0	[1..275]	[1..275]
FPG_BACSU - Formamidopyrimidine-DNA glycosylase OS=Bacillus subtilis GN=mutM PE=3 SV=4 gi\|221315175 - gi\|221315175\|ref\|ZP_03596980.1\| formamidopyrimidine-DNA glycosylase [Bacillus subtilis subsp. subtil... FPG_BACSU - Formamidopyrimidine-DNA glycosylase OS=Bacillus subtilis (strain 168) GN=mutM PE=3 SV=4 gi\|221324374 - gi\|221324374\|ref\|ZP_03605668.1\| formamidopyrimidine-DNA glycosylase [Bacillus subtilis subsp. subtil... gi\|221320092 - gi\|221320092\|ref\|ZP_03601386.1\| formamidopyrimidine-DNA glycosylase [Bacillus subtilis subsp. subtil...	0.0	[1..275]	[1..275]
FPG_BACC1 - Formamidopyrimidine-DNA glycosylase OS=Bacillus cereus (strain ATCC 10987 / NRS 248) GN=mutM PE=3 SV...	0.0	[1..276]	[1..276]
gi\|229112051, gi... - gi\|229112051\|ref\|ZP_04241594.1\| Formamidopyrimidine-DNA glycosylase [Bacillus cereus Rock1-15], gi\|2... gi\|229129870, gi... - gi\|229129870\|ref\|ZP_04258836.1\| Formamidopyrimidine-DNA glycosylase [Bacillus cereus BDRD-Cer4], gi\|... gi\|228711022, gi... - gi\|229072088\|ref\|ZP_04205297.1\| Formamidopyrimidine-DNA glycosylase [Bacillus cereus F65185], gi\|228... gi\|229081838, gi... - gi\|229081838\|ref\|ZP_04214330.1\| Formamidopyrimidine-DNA glycosylase [Bacillus cereus Rock4-2], gi\|22... gi\|228636256, gi... - gi\|229147146\|ref\|ZP_04275504.1\| Formamidopyrimidine-DNA glycosylase [Bacillus cereus BDRD-ST24], gi\|... FPG_BACCR - Formamidopyrimidine-DNA glycosylase OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM 2152 / NBRC... gi\|218160031, gi... - gi\|218232074\|ref\|YP_002369382.1\| formamidopyrimidine-DNA glycosylase [Bacillus cereus B4264], gi\|218... gi\|229152781, gi... - gi\|229152781\|ref\|ZP_04280964.1\| Formamidopyrimidine-DNA glycosylase [Bacillus cereus m1550], gi\|2286... gi\|229048293, gi... - gi\|229048293\|ref\|ZP_04193861.1\| Formamidopyrimidine-DNA glycosylase [Bacillus cereus AH676], gi\|2287...	0.0	[1..276]	[1..276]
gi\|228903103, gi... - gi\|228903103\|ref\|ZP_04067239.1\| Formamidopyrimidine-DNA glycosylase [Bacillus thuringiensis IBL 4222... gi\|228849176, gi... - gi\|228910410\|ref\|ZP_04074225.1\| Formamidopyrimidine-DNA glycosylase [Bacillus thuringiensis IBL 200]... gi\|74490499, gi\|... - gi\|75762013\|ref\|ZP_00741927.1\| Formamidopyrimidine-DNA glycosylase [Bacillus thuringiensis serovar i... gi\|218542389, gi... - gi\|218899739\|ref\|YP_002448150.1\| formamidopyrimidine-DNA glycosylase [Bacillus cereus G9842], gi\|218...	0.0	[1..276]	[1..276]
gi\|47557782, gi\|... - gi\|47564996\|ref\|ZP_00236039.1\| formamidopyrimidine-DNA glycosylase [Bacillus cereus G9241], gi\|47557...	0.0	[1..276]	[1..276]
gi\|163942319, gi... - gi\|89207574\|ref\|ZP_01186112.1\| Formamidopyrimidine-DNA glycolase [Bacillus weihenstephanensis KBAB4]...	0.0	[1..276]	[1..276]
gi\|89201563, gi\|... - gi\|89201563\|ref\|ZP_01180301.1\| Formamidopyrimidine-DNA glycolase [Bacillus cereus subsp. cytotoxis N...	0.0	[1..275]	[1..275]
gi\|2635373, gi\|1... - gi\|2635373\|emb\|CAB14868.1\| formamidopyrimidine-DNA glycosidase [Bacillus subtilis subsp. subtilis st... gi\|7435501, gi\|2... - gi\|7435501\|pir\|\|B69663 formamidopyrimidine-DNA glycosidase mutM - Bacillus subtilis, gi\|2293273\|gb\|A...	0.0	[2..275]	[4..277]
gi\|89100390, gi\|... - gi\|89100390\|ref\|ZP_01173254.1\| formamidopyrimidine-DNA glycosylase [Bacillus sp. NRRL B-14911], gi\|8...	0.0	[1..273]	[1..273]

Back

Predicted Domain #1

Region A:
Residues: [1-276]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPELPEVENV RRTLENLVTG KTIEDVIVTY PKIVKRPDDA EIFKEMLKGE TIENIKRRGK  60
   61 FLLLYVTNYV IVSHLRMEGK FLLHQEDEPI DKHTHVRFLF TDGTELHYKD VRKFGTMHLF 120
  121 KKGEEMNQMP LADLGPEPFD AELTPQYLHE RLQKTNRKIK VVLLDQRLLV GLGNIYVDEV 180
  181 LFRSQIHPER EASSLTAEEI ERIYEATVTT LGEAVKRGGS TIRTYINSQG QIGSFQELLN 240
  241 VYGKKGEPCV TCGTILEKTV VGGRGTHYCP ICQPRI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	100.0
Match:	1l1tA
Description:	DNA repair protein MutM (Fpg)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
DNA N-glycosylase activity	4.06377793944255	bayes_pls_golite062009
oxidized base lesion DNA N-glycosylase activity	3.68895100180378	bayes_pls_golite062009
hydrolase activity, hydrolyzing N-glycosyl compounds	3.63831813037192	bayes_pls_golite062009
oxidized purine base lesion DNA N-glycosylase activity	3.50273405950314	bayes_pls_golite062009
DNA-(apurinic or apyrimidinic site) lyase activity	3.32722481172627	bayes_pls_golite062009
hydrolase activity, acting on glycosyl bonds	2.59048389792519	bayes_pls_golite062009
hydrolase activity	1.74627738237592	bayes_pls_golite062009
binding	1.7313696856499	bayes_pls_golite062009
DNA binding	1.22619720972604	bayes_pls_golite062009
nucleic acid binding	1.17199530230795	bayes_pls_golite062009
transcription regulator activity	1.16376707327858	bayes_pls_golite062009
protein binding	1.14219782236887	bayes_pls_golite062009
transcription factor activity	0.472763834470731	bayes_pls_golite062009
catalytic activity	0.101795606736461	bayes_pls_golite062009
lyase activity	0.0836281676510939	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: