YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24375450, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	147 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24375450, gi|....

Description	E-value	Query Range	Subject Range
gi\|52003251, gi\|... - gi\|52785415\|ref\|YP_091244.1\| hypothetical protein BLi01654 [Bacillus licheniformis ATCC 14580], gi\|5...	164.0	[0..1]	[145..1]
gi\|56420373, gi\|... - gi\|56420373\|ref\|YP_147691.1\| PTS system, fructose-specific enzyme II, BC component [Geobacillus kaus... gi\|47076798 - gi\|47076798\|dbj\|BAD18340.1\| PTS system, fructose C-specific enzyme II, BC component [Geobacillus kau...	163.0	[0..1]	[145..1]
gi\|41584042, gi\|... - gi\|42519753\|ref\|NP_965683.1\| phosphoenolpyruvate-dependent sugar phosphotransferase system EIIABC, f...	163.0	[0..1]	[145..1]
gi\|152976110, gi... - gi\|89202202\|ref\|ZP_01180931.1\| Phosphotransferase system PTS, fructose-specific IIB subunit:PTS syst...	160.0	[0..1]	[145..1]
gi\|56963043, gi\|... - gi\|56963043\|ref\|YP_174770.1\| PTS system, fructose-specific enzyme II, BC component [Bacillus clausii...	159.0	[0..1]	[145..1]
gi\|49478953, gi\|... - gi\|49478953\|ref\|YP_037782.1\| PTS fructose-specific enzyme IIBC component [Bacillus thuringiensis ser...	159.0	[0..1]	[145..1]
gi\|49180491, gi\|... - gi\|49186564\|ref\|YP_029816.1\| PTS system, fructose-specific IIABC component [Bacillus anthracis str. ... gi\|170706772, gi... - gi\|170706772\|ref\|ZP_02897230.1\| PTS system, fructose-specific IIABC component [Bacillus anthracis st... gi\|170666744, gi... - gi\|170689286\|ref\|ZP_02880481.1\| PTS system, fructose-specific IIABC component [Bacillus anthracis st... gi\|167636059, gi... - gi\|167636059\|ref\|ZP_02394365.1\| PTS system, fructose-specific IIABC component [Bacillus anthracis st... gi\|254759436 - gi\|254759436\|ref\|ZP_05211461.1\| PTS system, fructose-specific IIABC component [Bacillus anthracis st... gi\|254739550 - gi\|254739550\|ref\|ZP_05197245.1\| PTS system, fructose-specific IIABC component [Bacillus anthracis st... gi\|254683577 - gi\|254683577\|ref\|ZP_05147437.1\| PTS system, fructose-specific IIABC component [Bacillus anthracis st...	159.0	[0..1]	[145..1]
gi\|30258364, gi\|... - gi\|30263720\|ref\|NP_846097.1\| PTS system, fructose-specific IIABC component [Bacillus anthracis str. ... gi\|190560433, gi... - gi\|190568429\|ref\|ZP_03021336.1\| PTS system, fructose-specific IIABC component [Bacillus anthracis Ts... gi\|47504281, gi\|... - gi\|47529133\|ref\|YP_020482.1\| PTS system, fructose-specific IIABC component [Bacillus anthracis str. ... gi\|167512279, gi... - gi\|167639878\|ref\|ZP_02398147.1\| PTS system, fructose-specific IIABC component [Bacillus anthracis st... gi\|254735751 - gi\|254735751\|ref\|ZP_05193457.1\| PTS system, fructose-specific IIABC component [Bacillus anthracis st... gi\|172082439, gi... - gi\|177652070\|ref\|ZP_02934616.1\| PTS system, fructose-specific IIABC component [Bacillus anthracis st... gi\|229268753, gi... - gi\|229604345\|ref\|YP_002867956.1\| PTS system, fructose-specific IIABC component [Bacillus anthracis s... gi\|227813384, gi... - gi\|227813384\|ref\|YP_002813393.1\| PTS system, fructose-specific IIABC component [Bacillus anthracis s...	159.0	[0..1]	[145..1]
gi\|30021812, gi\|... - gi\|30021812\|ref\|NP_833443.1\| PTS system, fructose-specific IIABC component [Bacillus cereus ATCC 145... gi\|228654230, gi... - gi\|229128993\|ref\|ZP_04257966.1\| PTS system, IIbc component [Bacillus cereus BDRD-Cer4], gi\|228654230... gi\|229146287, gi... - gi\|229146287\|ref\|ZP_04274659.1\| PTS system, IIbc component [Bacillus cereus BDRD-ST24], gi\|228637161...	159.0	[0..1]	[145..1]
gi\|47569241, gi\|... - gi\|47569241\|ref\|ZP_00239927.1\| PTS system, fructose-specific family, IIABC components [Bacillus cere...	159.0	[0..1]	[145..1]

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Predicted Domain #1

Region A:
Residues: [1-147]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELRTILRPE CTTCATPGSK KKVLELISDL AAAQYPTLSS QAIFESLVAR EKMGSTGIGN  60
   61 GIAIPHGRLT DITQPIAILI KCEEPIAFDA IDKQPVDILF ALLVPANQCQ QHLSTLSCMA 120
  121 EKLSDKQVLK QLRKTHDETE LYQVIIG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	30.0
Match:	1a6jA
Description:	Nitrogen regulatory bacterial protein IIa-ntr
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
protein-N(PI)-phosphohistidine-sugar phosphotransferase activity	4.89047341597444	bayes_pls_golite062009
anion transmembrane transporter activity	4.24001113213235	bayes_pls_golite062009
inorganic anion transmembrane transporter activity	3.94111218055933	bayes_pls_golite062009
carbohydrate transmembrane transporter activity	3.92377913213665	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	3.64568675122187	bayes_pls_golite062009
ion transmembrane transporter activity	2.5059397756077	bayes_pls_golite062009
transporter activity	2.16741930408232	bayes_pls_golite062009
bicarbonate transmembrane transporter activity	2.067679569708	bayes_pls_golite062009
transmembrane transporter activity	2.05879816720019	bayes_pls_golite062009
active transmembrane transporter activity	1.87457143976439	bayes_pls_golite062009
substrate-specific transporter activity	1.82451780056478	bayes_pls_golite062009
chloride transmembrane transporter activity	1.57532948941308	bayes_pls_golite062009
anion exchanger activity	1.57532948941308	bayes_pls_golite062009
anion:anion antiporter activity	1.07225541736305	bayes_pls_golite062009
transcription regulator activity	0.789390286938302	bayes_pls_golite062009
catalytic activity	0.547925219495929	bayes_pls_golite062009
binding	0.396676636991646	bayes_pls_golite062009
phosphotransferase activity, alcohol group as acceptor	0.19707628828681	bayes_pls_golite062009
cation transmembrane transporter activity	0.191423093908067	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: