YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24374309, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	291 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24374309, gi|....

Description	E-value	Query Range	Subject Range
gi\|78691626, gi\|... - gi\|78691626\|ref\|ZP_00856232.1\| 2-hydroxy-3-oxopropionate reductase [Shewanella sp. MR-7], gi\|7850897...	231.0	[0..1]	[291..1]
gi\|160860401, gi... - gi\|160874879\|ref\|YP_001554195.1\| 6-phosphogluconate dehydrogenase NAD-binding [Shewanella baltica OS... gi\|151364864, gi... - gi\|153000246\|ref\|YP_001365927.1\| 6-phosphogluconate dehydrogenase NAD-binding [Shewanella baltica OS...	230.0	[0..1]	[291..1]
gi\|113885410, gi... - gi\|82498193\|ref\|ZP_00883704.1\| 2-hydroxy-3-oxopropionate reductase [Shewanella sp. MR-4], gi\|8240382...	230.0	[0..1]	[291..1]
gi\|117920995, gi... - gi\|78688091\|ref\|ZP_00852814.1\| 2-hydroxy-3-oxopropionate reductase [Shewanella sp. ANA-3], gi\|785041...	229.0	[0..1]	[291..1]
gi\|120559332, gi... - gi\|82744320\|ref\|ZP_00906892.1\| 2-hydroxy-3-oxopropionate reductase [Shewanella sp. W3-18-1], gi\|8271... gi\|145564377, gi... - gi\|77816457\|ref\|ZP_00815643.1\| 6-phosphogluconate dehydrogenase, NAD-binding [Shewanella putrefacien...	229.0	[0..1]	[291..1]
gi\|68518004, gi\|... - gi\|68544291\|ref\|ZP_00583950.1\| 6-phosphogluconate dehydrogenase, NAD-binding [Shewanella baltica OS1...	227.0	[0..1]	[291..1]
gi\|25283637 - pir\|\|G97310 dehydrogenase related to 3-hydroxyisobutyrate dehydrogenase, YKWC B. subtilis ortholog [... gi\|15896585, gi\|... - gi\|15896585\|ref\|NP_349934.1\| 3-hydroxyisobutyrate dehydrogenase [Clostridium acetobutylicum ATCC 824...	224.0	[0..2]	[288..6]
gi\|56419562, gi\|... - gi\|56419562\|ref\|YP_146880.1\| 3-hydroxyisobutyrate dehydrogenase [Geobacillus kaustophilus HTA426], g...	224.0	[0..1]	[286..1]
gi\|56179493, gi\|... - gi\|56460483\|ref\|YP_155764.1\| 2-hydroxy-3-oxopropionate reductase [Idiomarina loihiensis L2TR], gi\|56...	224.0	[0..1]	[288..1]
gi\|89336363, gi\|... - gi\|89896915\|ref\|YP_520402.1\| tartronate semialdehyde reductase [Desulfitobacterium hafniense Y51], g...	223.0	[0..2]	[290..1]

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Predicted Domain #1

Region A:
Residues: [1-291]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKVAFIGLG VMGYPMARHL LNKGHEVTVY NRTFAKAQTW VDTYGGRCCP TPKEAAIGQD  60
   61 IVFTCVGNDN DLREVVLGDD GVIHGMALGT VLVDHTTASA DVARELHKVL GEKGIDFLDA 120
  121 PVSGGQAGAE NGVLTVMVGG EQAVFERVKP VIEAFARCAE RLGEVGAGQL TKMVNQICIA 180
  181 GVVQGLAEAL QFARKAGLDG EKVVEVISKG AAQSWQMENR YKTMWAQNYD FGFAVDWMRK 240
  241 DLGIALEEAR RNGSHLPLTA LVDQFYSEVQ AMGGNRWDTS SLLARFEKNT K

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	51.0
Match:	1vpdA
Description:	X-RAY CRYSTAL STRUCTURE OF TARTRONATE SEMIALDEHYDE REDUCTASE [SALMONELLA TYPHIMURIUM LT2]
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
oxidoreductase activity	3.09625241707629	bayes_pls_golite062009
structural constituent of muscle	2.52378713234588	bayes_pls_golite062009
catalytic activity	1.79741889688267	bayes_pls_golite062009
oxidoreductase activity, acting on CH-OH group of donors	1.65338499044318	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	1.47309297191111	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-CH group of donors	1.38219425408212	bayes_pls_golite062009
S-(hydroxymethyl)glutathione dehydrogenase activity	1.31022230162074	bayes_pls_golite062009
retinol dehydrogenase activity	1.27546550701764	bayes_pls_golite062009
3-hydroxyacyl-CoA dehydrogenase activity	1.07006097264025	bayes_pls_golite062009
malate dehydrogenase activity	0.63606663166401	bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity	0.527946013169731	bayes_pls_golite062009
phosphogluconate dehydrogenase (decarboxylating) activity	0.44449320501876	bayes_pls_golite062009
enoyl-CoA hydratase activity	0.250698007650211	bayes_pls_golite062009
methylenetetrahydrofolate dehydrogenase activity	0.169301675015808	bayes_pls_golite062009
methenyltetrahydrofolate cyclohydrolase activity	0.162625185692811	bayes_pls_golite062009
pyrroline-5-carboxylate reductase activity	0.136294435614813	bayes_pls_golite062009
binding	0.116896827329077	bayes_pls_golite062009
glyoxylate reductase activity	0.0221984076575323	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: