YRC Public Data Repository - Protein Structure Prediction

Protein:	SUCC_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	388 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SUCC_SHEON.

Description	E-value	Query Range	Subject Range
gi\|229329559, gi... - gi\|229499501\|ref\|ZP_04393185.1\| succinyl-CoA synthetase, beta subunit [Geobacillus sp. Y412MC52], gi... gi\|220708091, gi... - gi\|221088098\|ref\|ZP_03557632.1\| succinyl-CoA synthetase, beta subunit [Geobacillus sp. Y412MC61], gi... SUCC_GEOKA - Succinyl-CoA ligase [ADP-forming] subunit beta OS=Geobacillus kaustophilus (strain HTA426) GN=sucC P... SUCC_GEOKA - Succinyl-CoA ligase [ADP-forming] subunit beta OS=Geobacillus kaustophilus GN=sucC PE=3 SV=1	357.0	[0..1]	[385..1]
SUCC_PSEF5 - Succinyl-CoA ligase [ADP-forming] subunit beta OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-47...	356.0	[0..1]	[388..1]
SUCC_PSEPF - Succinyl-CoA ligase [ADP-forming] subunit beta OS=Pseudomonas fluorescens (strain Pf0-1) GN=sucC PE=...	353.0	[0..1]	[388..1]
SUCC_LEGPC - Succinyl-CoA ligase [ADP-forming] subunit beta OS=Legionella pneumophila (strain Corby) GN=sucC PE=3... SUCC_LEGPL - Succinyl-CoA ligase [ADP-forming] subunit beta OS=Legionella pneumophila (strain Lens) GN=sucC PE=3 ...	353.0	[0..1]	[385..1]
SUCC_BACLD - Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bacillus licheniformis (strain ATCC 14580 / DSM 13...	353.0	[0..1]	[386..1]
gi\|52840778, gi\|... - gi\|52840778\|ref\|YP_094577.1\| succinyl CoA synthetase beta chain [Legionella pneumophila subsp. pneum...	352.0	[0..1]	[385..20]
SUCC_PSESM - Succinyl-CoA ligase [ADP-forming] subunit beta OS=Pseudomonas syringae pv. tomato GN=sucC PE=1 SV=1 gi\|213927161, gi... - gi\|213968181\|ref\|ZP_03396326.1\| succinyl-CoA synthase, beta subunit [Pseudomonas syringae pv. tomato... gi\|237803497 - gi\|237803497\|ref\|ZP_04591082.1\| succinyl-CoA synthetase subunit beta [Pseudomonas syringae pv. oryza... SUCC_PSESM - Succinyl-CoA ligase [ADP-forming] subunit beta OS=Pseudomonas syringae pv. tomato (strain DC3000) GN...	352.0	[0..1]	[388..1]
SUCC_LEGPA - Succinyl-CoA ligase [ADP-forming] subunit beta OS=Legionella pneumophila (strain Paris) GN=sucC PE=3...	352.0	[0..1]	[385..1]
gi\|90406989, gi\|... - gi\|90406989\|ref\|ZP_01215179.1\| succinyl-CoA synthetase subunit beta [Psychromonas sp. CNPT3], gi\|903...	351.0	[0..1]	[387..1]
tr\|F3G8R8\|F3G8R8... - Succinate--CoA ligase [ADP-forming] subunit beta OS=Pseudomonas syringae pv. pisi str. 1704B GN=sucC... SUCC_PSEU2 - Succinyl-CoA ligase [ADP-forming] subunit beta OS=Pseudomonas syringae pv. syringae (strain B728a) G...	351.0	[0..1]	[388..1]

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Predicted Domain #1

Region A:
Residues: [1-388]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLHEYQAKS LFAEYGLPVS EGFACDTAQE AVEAAGRIGG NLWVVKCQVH AGGRGKAGGV  60
   61 KVTGDKEEIR AFAEYWLGKN LVTYQTDEKG QPVAKILVES CTDIANELYL GAVVDRATRR 120
  121 VVFMASTEGG VEIEKVAEET PELIHKAIID PLTGPQPFQA RDLGFKLGLN PTQMKQFTKI 180
  181 FMGLATMFVD HDFALLEINP LVITTEGNLH CLDGKIGIDG NALFRQPKIK AMHDPSQDDA 240
  241 REAHAAMFEL NYVALDGNVG CMVNGAGLAM GTMDIVNLHG GKPANFLDVG GGATKERVAE 300
  301 AFKIILSDSN VKAVLVNIFG GIVRCDMIAE GIIGAVKEVG VKVPVVVRLE GTNAELGREV 360
  361 LAKSGLDIIA ANSLTDAAEL VVKAAEGK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	91.045757
Match:	1jkjB
Description:	Succinyl-CoA synthetase, beta-chain, C-terminal domain; Succinyl-CoA synthetase, beta-chain, N-terminal domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
succinate-CoA ligase (GDP-forming) activity	9.38156037766008	bayes_pls_golite062009
succinate-CoA ligase activity	9.37213380498009	bayes_pls_golite062009
CoA-ligase activity	8.19630272128785	bayes_pls_golite062009
acid-thiol ligase activity	7.98453115335343	bayes_pls_golite062009
succinate-CoA ligase (ADP-forming) activity	7.27105019329796	bayes_pls_golite062009
ligase activity, forming carbon-sulfur bonds	7.23103788464777	bayes_pls_golite062009
ligase activity	3.25077459445999	bayes_pls_golite062009
ATP citrate synthase activity	3.09252003125984	bayes_pls_golite062009
transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer	3.07329302783164	bayes_pls_golite062009
catalytic activity	2.5009559386228	bayes_pls_golite062009
CoA carboxylase activity	1.75094739650292	bayes_pls_golite062009
ligase activity, forming carbon-carbon bonds	1.59015373957506	bayes_pls_golite062009
acetyl-CoA carboxylase activity	1.29064883699349	bayes_pls_golite062009
transferase activity, transferring acyl groups	1.15639517822408	bayes_pls_golite062009
ligase activity, forming carbon-nitrogen bonds	0.992008268375695	bayes_pls_golite062009
binding	0.346654244533873	bayes_pls_golite062009
biotin carboxylase activity	0.0172732430077291	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: