YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24345852, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	668 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24345852, gi|....

Description	E-value	Query Range	Subject Range
gi\|78686168, gi\|... - gi\|78686168\|ref\|ZP_00850939.1\| Succinate dehydrogenase or fumarate reductase, flavoprotein subunit [...	586.0	[0..1]	[668..1]
gi\|78690781, gi\|... - gi\|78690781\|ref\|ZP_00855420.1\| Succinate dehydrogenase or fumarate reductase, flavoprotein subunit [... gi\|113968748, gi... - gi\|82497197\|ref\|ZP_00882755.1\| Succinate dehydrogenase or fumarate reductase, flavoprotein subunit [...	585.0	[0..1]	[668..1]
gi\|126176125, gi... - gi\|68543137\|ref\|ZP_00582852.1\| Succinate dehydrogenase or fumarate reductase, flavoprotein subunit [...	581.0	[0..1]	[668..1]
gi\|145566214, gi... - gi\|146294524\|ref\|YP_001184948.1\| fumarate reductase flavoprotein subunit [Shewanella putrefaciens CN... gi\|82719643, gi\|... - gi\|82742986\|ref\|ZP_00905657.1\| Succinate dehydrogenase or fumarate reductase, flavoprotein subunit [...	581.0	[0..1]	[668..1]
gi\|113947696, gi... - gi\|160877180\|ref\|YP_001556496.1\| fumarate reductase flavoprotein subunit [Shewanella baltica OS195],...	580.0	[0..1]	[668..1]
gi\|69949276, gi\|... - gi\|69949276\|ref\|ZP_00637336.1\| Succinate dehydrogenase or fumarate reductase, flavoprotein subunit [...	569.0	[0..1]	[668..1]
gi\|32262235, gi\|... - gi\|32266185\|ref\|NP_860217.1\| fumarate reductase flavoprotein subunit [Helicobacter hepaticus ATCC 51...	563.0	[0..1]	[654..1]
gi\|113198407, gi... - gi\|86154768\|ref\|ZP_01072935.1\| fumarate reductase flavoprotein subunit [Campylobacter fetus subsp. f...	560.0	[0..1]	[653..1]

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Predicted Domain #1

Region A:
Residues: [1-668]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLIYTDSLV VGAGLAGLRV AIASKERGLD TLVLSLIPAK RSHSAAAQGG MQASLGNAVK  60
   61 GMGDDEDVHF QDTVKGSDWG CDQEVARMFA HCAPKAVREL ANWGVPWSRV SAGPREVIVN 120
  121 AQKVTLQEAE EAHGLINARD FGGTKKWRTC YTADGTGHSL LYAMDNKAIS MDIPVHERVE 180
  181 ALALIHDGER CHGVVARCLI SGELRAYVAK STTIATGGYG RIYEVSTNAI ICEGIGQALA 240
  241 LETGVATLGN MEAVQFHPTA IVPVGILTTE GCRGDGGLLR DKDGYRFMPD YEPEKKELAS 300
  301 RDVVSRRMTE HMRKGKGVDS PYGPHLWLDI TLLGRKHIET NLREVQEICE NFLGIDPAKD 360
  361 WIPVRPTQHY SMGGIRTKAT GESPQLKGLF SVGEAACWDM HGFNRLGGNS LAETVVGGMI 420
  421 IGKYIADFCE NNSLEINTTL AEQFMRQVQT EIDTLVDGDG HESPFELKHA MQRIMMDYVG 480
  481 IFRNGPELDK AVTELKALLE RSRKLGIKCK KRHANPELVE ALRVKRMLKV ALTVACGAAA 540
  541 RTESRGAHAR EDYPQRNDRD WLNRTLASWP DANALEPVLS YEPLDVMKME LPPGYRGYGI 600
  601 DNAIAHPDTA KREQQIAQIL AELGEDADRY QRQAALMPFE LPPSLQANNE RLSDTLQKPS 660
  661 ANALGEKS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	157.0
Match:	1e7pA
Description:	Fumarate reductase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
succinate dehydrogenase (ubiquinone) activity	8.87698547678677	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-CH group of donors, quinone or related compound as acceptor	8.87698547678677	bayes_pls_golite062009
L-aspartate oxidase activity	7.97437641217089	bayes_pls_golite062009
aspartate oxidase activity	7.32727957948448	bayes_pls_golite062009
oxidoreductase activity	6.04709872216269	bayes_pls_golite062009
oxidoreductase activity, acting on NADH or NADPH	5.74880353813045	bayes_pls_golite062009
succinate dehydrogenase activity	4.75922280235383	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-CH group of donors	4.30055937900308	bayes_pls_golite062009
NADPH-adrenodoxin reductase activity	3.86336671540719	bayes_pls_golite062009
hydrogen ion transmembrane transporter activity	2.57282017498189	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor	2.52207884417451	bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity	2.50603438449246	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	2.28982462439281	bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors, NAD or NADP as acceptor	2.26549080531565	bayes_pls_golite062009
oxygen-dependent protoporphyrinogen oxidase activity	2.16428165652808	bayes_pls_golite062009
dihydrolipoyl dehydrogenase activity	1.91979117253135	bayes_pls_golite062009
catalytic activity	1.56773888754354	bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors	1.18990628739838	bayes_pls_golite062009
antioxidant activity	1.12347155061135	bayes_pls_golite062009
transporter activity	0.890824576391732	bayes_pls_golite062009
binding	0.845557020684164	bayes_pls_golite062009
transmembrane transporter activity	0.706117386114413	bayes_pls_golite062009
ferredoxin reductase activity	0.61713057030514	bayes_pls_golite062009
oxidoreductase activity, acting on iron-sulfur proteins as donors, NAD or NADP as acceptor	0.61713057030514	bayes_pls_golite062009
ferredoxin-NADP+ reductase activity	0.61713057030514	bayes_pls_golite062009
substrate-specific transporter activity	0.491481205015383	bayes_pls_golite062009
succinate-CoA ligase activity	0.468246082354334	bayes_pls_golite062009
coenzyme binding	0.424849261981	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	0.26114823844682	bayes_pls_golite062009
electron carrier activity	0.162567940185023	bayes_pls_golite062009
protein binding	0.139858531143419	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: