Protein: | gi|207343419 |
Organism: | Saccharomyces cerevisiae AWRI1631 |
Length: | 551 amino acids |
Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|207343419.
Description | E-value | Query Range |
Subject Range |
|
0.0 | [1..551] | [1..551] |
|
0.0 | [45..544] | [7..487] |
|
0.0 | [85..545] | [1..456] |
|
0.0 | [83..545] | [4..462] |
|
0.0 | [47..549] | [1..495] |
|
0.0 | [44..541] | [1..493] |
Region A: Residues: [1-154] |
1 11 21 31 41 51 | | | | | | 1 MSSGTENDQF YSFDESDSSS IELYESHNTS EFTIHGLVFP KLISVTSQDS EFDINEDEDG 60 61 VDTIYEGMLD APLTKNNKRI LCEGSVPNLS YECLTTKGIF ERMLQRVDHL QPIFAIPSAD 120 121 ILILLQHYDW NEERLLEVWT EKMDELLVEL GLST |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
Region A: Residues: [155-293] |
1 11 21 31 41 51 | | | | | | 1 TANIKKDNDY NSHFREVEFK NDFTCIICCD KKDTETFALE CGHEYCINCY RHYIKDKLHE 60 61 GNIITCMDCS LALKNEDIDK VMGHPSSSKL MDSSIKSFVQ KHNRNYKWCP FADCKSIVHL 120 121 RDTSSLPEYT RLHYSPFVK |
Detection Method: | |
Confidence: | 2.045757 |
Match: | 1rmd__ |
Description: | V(D)J recombination activating protein 1 (RAG1), dimerization domain |
Matching Structure (courtesy of the PDB): |
Region A: Residues: [294-386] |
1 11 21 31 41 51 | | | | | | 1 CNSFHRFCFN CGFEVHSPAD CKITTAWVKK ARKESEILNW VLSHTKECPK CSVNIEKNGG 60 61 CNHMVCSSCK YEFCWICEGP WAPHGKNFFQ CTM |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
Region A: Residues: [387-551] |
1 11 21 31 41 51 | | | | | | 1 YKNNEDNKSK NPQDANKTLK KYTFYYRLFN EHEVSAKLDW NLGQTLGTKV HALQERIGIS 60 61 WIDGQFLSES LKVLNEGRTV LKWSFAVAYY SDASHNLTKI FVDNQMLLAN AVESLSELLQ 120 121 IKTPEVIMKR RPEFYNKAGY VENRTTALME CGRELLCKGI CKAAE |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
Term | Confidence | Notes |
ubiquitin-protein ligase activity | 5.65442784325159 | bayes_pls_golite062009 |
small conjugating protein ligase activity | 5.55686022186257 | bayes_pls_golite062009 |
acid-amino acid ligase activity | 4.59153177011595 | bayes_pls_golite062009 |
ligase activity, forming carbon-nitrogen bonds | 3.07217714843839 | bayes_pls_golite062009 |
binding | 2.19426901055464 | bayes_pls_golite062009 |
protein binding | 1.62051249360163 | bayes_pls_golite062009 |
small conjugating protein-specific protease activity | 1.2126425713931 | bayes_pls_golite062009 |
ubiquitin-specific protease activity | 1.03469202541773 | bayes_pls_golite062009 |
nucleic acid binding | 0.708499177773075 | bayes_pls_golite062009 |
ligase activity | 0.63517530468004 | bayes_pls_golite062009 |
transcription regulator activity | 0.553991532499653 | bayes_pls_golite062009 |
cysteine-type peptidase activity | 0.50197530717959 | bayes_pls_golite062009 |
ubiquitin thiolesterase activity | 0.265769062717221 | bayes_pls_golite062009 |
DNA binding | 0.227671243150662 | bayes_pls_golite062009 |
hydrolase activity | 0.156835837705934 | bayes_pls_golite062009 |
catalytic activity | 0.14112008370434 | bayes_pls_golite062009 |
peptidase activity | 0.121357659741468 | bayes_pls_golite062009 |
Region A: Residues: [392-551] |
1 11 21 31 41 51 | | | | | | 1 DNKSKNPQDA NKTLKKYTFY YRLFNEHEVS AKLDWNLGQT LGTKVHALQE RIGISWIDGQ 60 61 FLSESLKVLN EGRTVLKWSF AVAYYSDASH NLTKIFVDNQ MLLANAVESL SELLQIKTPE 120 121 VIMKRRPEFY NKAGYVENRT TALMECGREL LCKGICKAAE |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.