| Protein: | gi|42572335 |
| Organism: | Arabidopsis thaliana |
| Length: | 672 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|42572335.
| Description | E-value | Query Range |
Subject Range |
|
|
371.0 | [0..1] | [632..1] |
|
Region A: Residues: [1-272] |
1 11 21 31 41 51
| | | | | |
1 MVATMDLNAS PQPEEDDEPY VRHLEDYSSR DERIESAVEI ARREREERKK RMRYDKPTHN 60
61 SQPVFRDQYY QNRNTKAYDR YKIPQGWLDC PPSGNEIGFL VPSKVPLNES YNNHVPPGSR 120
121 YSFKQVIHNQ RIAGRKLGLV IDLTNTTRYY STTDLKKEGI KHVKIACKGR DAVPDNVSVN 180
181 AFVNEVNQFV LNLKHSKKYI LVHCTHGHNR TGFMIVHYLM RSGPMNVTQA LKIFSDARPP 240
241 GIYKPDYIDA LYSFYHEIKP ESVICPSTPE WK
|
| Detection Method: |  |
| Confidence: | 30.522879 |
| Match: | 2c46A |
| Description: | CRYSTAL STRUCTURE OF THE HUMAN RNA guanylyltransferase and 5'- phosphatase |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [273-388] |
1 11 21 31 41 51
| | | | | |
1 RSTELDLNGE ALPDDEDDDG GPAGPVQGFQ EESHQVDVKM SNDDVLGDEI PPDQEEGYRQ 60
61 FFYRMLSLNI GGRGCSQFPG SHPVSLNREN LQLLRQRYYY ATWKADGTRY MMLLTT
|
| Detection Method: | |
| Confidence: | 2.19 |
| Match: | 1ckmA |
| Description: | RNA guanylyltransferase (mRNA capping enzyme); RNA guanylyltransferase (mRNA capping enzyme), N-terminal domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [389-672] |
1 11 21 31 41 51
| | | | | |
1 DGCYIVDRSF RFRRVQMRFP FRHPTEGISD KVHHFTLLDG EMIIDTLPDK QKQERRYLIY 60
61 DMVAINGQSV VERPFYERWK MLEKEVIDPR NHEKARSHIY RYDLEPFRVR RKDFWLLSAV 120
121 EKVLKGFIPS LSHEADGLIF QGWDDPYVPR THEGLLKWKY PEMNSVDFLY EQDESGRGML 180
181 SLFERGKKKH MDGNSVVFRD DSDPAEYSGK IVECSWDQDE KVWVSMRVRV DKSTPNDINT 240
241 FRKVMRSIKD NITEEVLLQE IREIIRLPMY ADRIQMDSKA ARRR
|
| Detection Method: | |
| Confidence: | 24.154902 |
| Match: | 1p16A |
| Description: | mRNA capping enzyme alpha subunit |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| mRNA guanylyltransferase activity | 8.90512192081791 | bayes_pls_golite062009 |
| RNA guanylyltransferase activity | 8.46124967325993 | bayes_pls_golite062009 |
| guanylyltransferase activity | 5.45528434251369 | bayes_pls_golite062009 |
| hydrolase activity, acting on ester bonds | 3.08627215479695 | bayes_pls_golite062009 |
| ligase activity, forming phosphoric ester bonds | 2.90848936326491 | bayes_pls_golite062009 |
| DNA ligase activity | 2.88630907730339 | bayes_pls_golite062009 |
| ligase activity | 2.7348192562888 | bayes_pls_golite062009 |
| RNA binding | 2.41160981373213 | bayes_pls_golite062009 |
| hydrolase activity | 2.27001407788735 | bayes_pls_golite062009 |
| catalytic activity | 2.15370807854636 | bayes_pls_golite062009 |
| structure-specific DNA binding | 1.81524862921454 | bayes_pls_golite062009 |
| structural constituent of ribosome | 1.6315894906264 | bayes_pls_golite062009 |
| binding | 1.63149986094272 | bayes_pls_golite062009 |
| single-stranded DNA binding | 1.62996999055328 | bayes_pls_golite062009 |
| 1.5765009871268 | bayes_pls_golite062009 | |
| nucleic acid binding | 1.39097817404242 | bayes_pls_golite062009 |
| DNA binding | 1.33524321669723 | bayes_pls_golite062009 |
| structural molecule activity | 1.32534541097134 | bayes_pls_golite062009 |
| ribonuclease activity | 1.19236946227657 | bayes_pls_golite062009 |
| exoribonuclease activity, producing 5'-phosphomonoesters | 1.15212468568198 | bayes_pls_golite062009 |
| exoribonuclease activity | 1.10445667068538 | bayes_pls_golite062009 |
| DNA ligase (ATP) activity | 1.02324195596817 | bayes_pls_golite062009 |
| transcription regulator activity | 0.996884322431837 | bayes_pls_golite062009 |
| 3'-5'-exoribonuclease activity | 0.83268201349295 | bayes_pls_golite062009 |
| translation regulator activity | 0.613904794456162 | bayes_pls_golite062009 |
| nuclease activity | 0.57381531077345 | bayes_pls_golite062009 |
| DNA ligase (NAD+) activity | 0.571203360462711 | bayes_pls_golite062009 |
| translation factor activity, nucleic acid binding | 0.566068090112017 | bayes_pls_golite062009 |
| RNA polymerase activity | 0.477127926059749 | bayes_pls_golite062009 |
| DNA-directed RNA polymerase activity | 0.477127926059749 | bayes_pls_golite062009 |
| mRNA binding | 0.4162128308402 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.32084431704638 | bayes_pls_golite062009 |
| translation initiation factor activity | 0.30211828233765 | bayes_pls_golite062009 |
| transcription factor activity | 0.298729064067577 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 0.287720615514972 | bayes_pls_golite062009 |
| protein binding | 0.229784545879049 | bayes_pls_golite062009 |
| ATP binding | 0.17947590671995 | bayes_pls_golite062009 |
| adenyl ribonucleotide binding | 0.148991737494582 | bayes_pls_golite062009 |
| adenyl nucleotide binding | 0.138964074823321 | bayes_pls_golite062009 |
