From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
Notes: | Classifier used Gene Ontology annotations. [FDR: 0.02] [SVM Score: 0.678425775909] |
Complex Size: | 2 proteins |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
NuA4 histone acetyltransferase complex | 4.5979E-6 | 2 | 14 | 2 | 6292 |
H4/H2A histone acetyltransferase complex | 4.5979E-6 | 2 | 14 | 2 | 6292 |
histone acetyltransferase complex | 4.7798E-5 | 2 | 44 | 2 | 6292 |
Piccolo NuA4 histone acetyltransferase complex | 9.5344E-4 | 2 | 3 | 1 | 6292 |
nucleoplasm part | 1.5102E-3 | 2 | 245 | 2 | 6292 |
nucleoplasm | 1.7541E-3 | 2 | 264 | 2 | 6292 |
Swr1 complex | 4.7627E-3 | 2 | 15 | 1 | 6292 |
nuclear lumen | 5.1728E-3 | 2 | 453 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
histone acetylation | 3.1832E-5 | 2 | 36 | 2 | 6292 |
protein amino acid acetylation | 5.2295E-5 | 2 | 46 | 2 | 6292 |
protein amino acid acylation | 8.6451E-5 | 2 | 59 | 2 | 6292 |
covalent chromatin modification | 1.9342E-4 | 2 | 88 | 2 | 6292 |
histone modification | 1.9342E-4 | 2 | 88 | 2 | 6292 |
chromatin modification | 7.0879E-4 | 2 | 168 | 2 | 6292 |
DNA repair | 9.2646E-4 | 2 | 192 | 2 | 6292 |
chromatin organization | 1.036E-3 | 2 | 203 | 2 | 6292 |
response to DNA damage stimulus | 1.4011E-3 | 2 | 236 | 2 | 6292 |
cellular response to stress | 2.1173E-3 | 2 | 290 | 2 | 6292 |
histone exchange | 3.1764E-3 | 2 | 10 | 1 | 6292 |
post-translational protein modification | 3.2108E-3 | 2 | 357 | 2 | 6292 |
cellular response to stimulus | 3.6193E-3 | 2 | 379 | 2 | 6292 |
response to stress | 6.2277E-3 | 2 | 497 | 2 | 6292 |
protein modification process | 6.278E-3 | 2 | 499 | 2 | 6292 |
chromosome organization | 7.7677E-3 | 2 | 555 | 2 | 6292 |
macromolecule modification | 8.1649E-3 | 2 | 569 | 2 | 6292 |
ATP-dependent chromatin remodeling | 8.248E-3 | 2 | 26 | 1 | 6292 |
DNA metabolic process | 8.631E-3 | 2 | 585 | 2 | 6292 |
nucleosome organization | 9.1975E-3 | 2 | 29 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
histone acetyltransferase activity | 5.3968E-3 | 2 | 17 | 1 | 6292 |
lysine N-acetyltransferase activity | 5.3968E-3 | 2 | 17 | 1 | 6292 |