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View Protein Complex Details

Complex Overview

From Publication: Ho Y. et al. (2002) Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry. Nature. 2002 Jan 10;415(6868):180-3.
Notes: This molecular complex record represents a population of complexes co-purified by immunoprecipitation of FLAG-tagged Mms2. The topolgies of protein complexes in this experiment are unknown.
Complex Size: 3 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

ubiquitin conjugating enzyme complex 1.5158E-7 3 2 2 6292
protein complex 5.8881E-3 3 1137 3 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

protein polyubiquitination 3.2051E-8 3 21 3 6292
protein ubiquitination 1.0526E-6 3 65 3 6292
protein modification by small protein conjugation 2.4663E-6 3 86 3 6292
protein modification by small protein conjugation or removal 5.7949E-6 3 114 3 6292
postreplication repair 2.3152E-5 3 18 2 6292
protein monoubiquitination 3.8264E-5 3 23 2 6292
post-translational protein modification 1.8121E-4 3 357 3 6292
farnesyl diphosphate biosynthetic process, mevalonate pathway 4.768E-4 3 1 1 6292
protein modification process 4.9605E-4 3 499 3 6292
macromolecule modification 7.3601E-4 3 569 3 6292
terpenoid metabolic process 9.5344E-4 3 2 1 6292
farnesyl diphosphate biosynthetic process 9.5344E-4 3 2 1 6292
farnesyl diphosphate metabolic process 9.5344E-4 3 2 1 6292
terpenoid biosynthetic process 9.5344E-4 3 2 1 6292
prenol metabolic process 1.4299E-3 3 3 1 6292
prenol biosynthetic process 1.4299E-3 3 3 1 6292
polyprenol metabolic process 1.4299E-3 3 3 1 6292
polyprenol biosynthetic process 1.4299E-3 3 3 1 6292
secondary metabolic process 2.3825E-3 3 5 1 6292
DNA repair 2.7234E-3 3 192 2 6292
isoprenoid metabolic process 2.8585E-3 3 6 1 6292
isoprenoid biosynthetic process 2.8585E-3 3 6 1 6292
response to DNA damage stimulus 4.0991E-3 3 236 2 6292
cellular protein metabolic process 4.9618E-3 3 1074 3 6292
protein metabolic process 5.8726E-3 3 1136 3 6292
cellular response to stress 6.1581E-3 3 290 2 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

ubiquitin-protein ligase activity 7.0513E-7 3 57 3 6292
small conjugating protein ligase activity 9.1141E-7 3 62 3 6292
acid-amino acid ligase activity 1.3774E-6 3 71 3 6292
ligase activity, forming carbon-nitrogen bonds 3.2303E-6 3 94 3 6292
ligase activity 1.3286E-5 3 150 3 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle