YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Protein Complex Details

Complex Overview

From Publication: Gavin A.C. et al. (2006) Proteome survey reveals modularity of the yeast cell machinery. Nature. 2006 Mar 30;440(7084):631-6. Epub 2006 Jan 22.
Notes: From the published set of protein complexes (core proteins only)
Complex Size: 4 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

nucleolus 1.4509E-4 4 211 3 6292
non-membrane-bounded organelle 5.368E-4 4 959 4 6292
intracellular non-membrane-bounded organelle 5.368E-4 4 959 4 6292
nuclear lumen 1.404E-3 4 453 3 6292
organelle lumen 4.2376E-3 4 660 3 6292
intracellular organelle lumen 4.2376E-3 4 660 3 6292
membrane-enclosed lumen 5.0309E-3 4 700 3 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

ribosome biogenesis 8.9951E-6 4 346 4 6292
ribonucleoprotein complex biogenesis 1.2296E-5 4 374 4 6292
cellular component biogenesis 1.4687E-4 4 694 4 6292
regulation of histone methylation 6.3573E-4 4 1 1 6292
negative regulation of histone methylation 6.3573E-4 4 1 1 6292
negative regulation of histone modification 6.3573E-4 4 1 1 6292
regulation of histone modification 6.3573E-4 4 1 1 6292
negative regulation of histone H3-K36 methylation 6.3573E-4 4 1 1 6292
regulation of histone H3-K36 methylation 6.3573E-4 4 1 1 6292
protein peptidyl-prolyl isomerization 6.3573E-4 4 1 1 6292
histone peptidyl-prolyl isomerization 6.3573E-4 4 1 1 6292
histone H3-K36 methylation 6.3573E-4 4 1 1 6292
histone lysine methylation 1.2712E-3 4 2 1 6292
regulation of chromosome organization 1.2712E-3 4 2 1 6292
negative regulation of protein modification process 2.5411E-3 4 4 1 6292
regulation of transcription, mating-type specific 3.1756E-3 4 5 1 6292
regulation of protein modification process 4.4437E-3 4 7 1 6292
ribosomal large subunit export from nucleus 5.7106E-3 4 9 1 6292
negative regulation of cellular protein metabolic process 9.5041E-3 4 15 1 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

cis-trans isomerase activity 8.8726E-3 4 14 1 6292
peptidyl-prolyl cis-trans isomerase activity 8.8726E-3 4 14 1 6292
histone binding 8.8726E-3 4 14 1 6292
specific transcriptional repressor activity 9.5041E-3 4 15 1 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle