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View Protein Complex Details

Complex Overview

From Publication: Riffle <i>et al</i>. (2010) (Unpublished Data)
Notes: Complex predicted from the combined set of Gavin (2002), Gavin (2006), Ho (2002) and Krogan (2006); at p-value cutoff of 1E-7
Complex Size: 4 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

chromatin remodeling complex 1.4406E-3 4 99 2 6292
DNA replication factor A complex 1.9063E-3 4 3 1 6292
chromatin accessibility complex 2.5411E-3 4 4 1 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

double-strand break repair 4.7822E-4 4 57 2 6292
DNA conformation change 4.952E-4 4 58 2 6292
chromatin remodeling 6.8098E-4 4 68 2 6292
cellular response to stimulus 8.288E-4 4 379 3 6292
organelle organization 1.0248E-3 4 1127 4 6292
nucleosome positioning 1.9063E-3 4 3 1 6292
negative regulation of transcription from RNA polymerase II promoter by pheromones 2.5411E-3 4 4 1 6292
negative regulation of gene-specific transcription from RNA polymerase II promoter 2.5411E-3 4 4 1 6292
negative regulation of gene-specific transcription 2.5411E-3 4 4 1 6292
negative regulation of transcription by pheromones 2.5411E-3 4 4 1 6292
chromosome organization 2.5518E-3 4 555 3 6292
DNA replication, synthesis of RNA primer 3.1756E-3 4 5 1 6292
cellular component organization 3.9851E-3 4 1582 4 6292
chromatin modification 4.1046E-3 4 168 2 6292
DNA repair 5.3374E-3 4 192 2 6292
chromatin organization 5.954E-3 4 203 2 6292
gene-specific transcription from RNA polymerase II promoter 6.3436E-3 4 10 1 6292
regulation of transcription by pheromones 6.3436E-3 4 10 1 6292
regulation of transcription from RNA polymerase II promoter by pheromones 6.3436E-3 4 10 1 6292
cellular response to pheromone 6.3436E-3 4 10 1 6292
regulation of gene-specific transcription from RNA polymerase II promoter 6.3436E-3 4 10 1 6292
response to stimulus 6.5381E-3 4 766 3 6292
response to DNA damage stimulus 7.9954E-3 4 236 2 6292
protein localization in Golgi apparatus 8.2408E-3 4 13 1 6292
protein retention in Golgi apparatus 8.2408E-3 4 13 1 6292
DNA unwinding involved in replication 8.8726E-3 4 14 1 6292
regulation of gene-specific transcription 9.5041E-3 4 15 1 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

nucleoside-triphosphatase activity 5.4488E-4 4 329 3 6292
hydrolase activity, acting on acid anhydrides 6.7144E-4 4 353 3 6292
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 6.7144E-4 4 353 3 6292
pyrophosphatase activity 6.7144E-4 4 353 3 6292
ATPase activity 6.4227E-3 4 211 2 6292
damaged DNA binding 6.9763E-3 4 11 1 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle