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View Protein Complex Details

Complex Overview

From Publication: Riffle <i>et al</i>. (2010) (Unpublished Data)
Notes: Complex predicted from the combined set of Gavin (2002), Gavin (2006), Ho (2002) and Krogan (2006); at p-value cutoff of 1E-7
Complex Size: 7 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

small nucleolar ribonucleoprotein complex 5.3771E-7 7 72 4 6292
90S preribosome 5.6973E-7 7 17 3 6292
ribonucleoprotein complex 1.8849E-6 7 514 6 6292
preribosome 4.973E-6 7 34 3 6292
nucleolus 3.9747E-5 7 211 4 6292
non-membrane-bounded organelle 7.5345E-5 7 959 6 6292
intracellular non-membrane-bounded organelle 7.5345E-5 7 959 6 6292
cytosolic small ribosomal subunit 7.3181E-4 7 38 2 6292
nuclear lumen 7.7894E-4 7 453 4 6292
macromolecular complex 1.6651E-3 7 1635 6 6292
Noc4p-Nop14p complex 2.224E-3 7 2 1 6292
small ribosomal subunit 2.6853E-3 7 73 2 6292
organelle lumen 3.2392E-3 7 660 4 6292
intracellular organelle lumen 3.2392E-3 7 660 4 6292
nuclear outer membrane 3.7089E-3 7 86 2 6292
membrane-enclosed lumen 4.0336E-3 7 700 4 6292
nuclear membrane 4.6971E-3 7 97 2 6292
cytosolic ribosome 5.0837E-3 7 101 2 6292
Noc complex 5.552E-3 7 5 1 6292
preribosome, small subunit precursor 6.6592E-3 7 6 1 6292
cytosolic part 7.3476E-3 7 122 2 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

rRNA processing 4.3425E-10 7 128 6 6292
rRNA metabolic process 6.572E-10 7 137 6 6292
maturation of SSU-rRNA 1.2631E-9 7 59 5 6292
ncRNA processing 1.0114E-8 7 215 6 6292
ncRNA metabolic process 2.9672E-8 7 257 6 6292
ribosome biogenesis 1.7714E-7 7 346 6 6292
maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 2.4008E-7 7 13 3 6292
ribonucleoprotein complex biogenesis 2.8234E-7 7 374 6 6292
RNA processing 3.1056E-7 7 380 6 6292
cellular component biogenesis 1.1204E-5 7 694 6 6292
gene expression 1.4468E-5 7 1283 7 6292
RNA metabolic process 7.3069E-5 7 954 6 6292
ribosomal small subunit biogenesis 3.4048E-4 7 26 2 6292
nucleic acid metabolic process 7.2556E-4 7 1415 6 6292
cellular macromolecule metabolic process 8.282E-4 7 2285 7 6292
macromolecule metabolic process 1.0051E-3 7 2349 7 6292
nucleobase, nucleoside, nucleotide and nucleic acid metabolic process 1.3005E-3 7 1566 6 6292
ribosomal subunit assembly 1.532E-3 7 55 2 6292
regulation of translation 1.6447E-3 7 57 2 6292
posttranscriptional regulation of gene expression 1.8819E-3 7 61 2 6292
ribosome assembly 2.0698E-3 7 64 2 6292
regulation of cellular protein metabolic process 2.3339E-3 7 68 2 6292
organelle assembly 2.4022E-3 7 69 2 6292
cellular nitrogen compound metabolic process 2.6186E-3 7 1770 6 6292
regulation of protein metabolic process 2.7584E-3 7 74 2 6292
nitrogen compound metabolic process 2.8003E-3 7 1791 6 6292
ribonucleoprotein complex assembly 4.2342E-3 7 92 2 6292
primary metabolic process 4.3588E-3 7 2896 7 6292
cellular metabolic process 6.026E-3 7 3033 7 6292
translation 6.1847E-3 7 376 3 6292
metabolic process 7.9792E-3 7 3157 7 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

snoRNA binding 4.8586E-4 7 31 2 6292
RNA helicase activity 8.9439E-4 7 42 2 6292
structural constituent of ribosome 1.194E-3 7 212 3 6292
helicase activity 3.4587E-3 7 83 2 6292
structural molecule activity 4.6122E-3 7 339 3 6292
RNA binding 5.7756E-3 7 367 3 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle