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View Protein Complex Details

Complex Overview

From Publication: Riffle <i>et al</i>. (2010) (Unpublished Data)
Notes: Complex predicted from the combined set of Gavin (2002), Gavin (2006), Ho (2002) and Krogan (2006); at p-value cutoff of 1E-7
Complex Size: 6 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

nucleolus 2.3635E-7 6 211 5 6292
nuclear lumen 1.0695E-5 6 453 5 6292
non-membrane-bounded organelle 1.2371E-5 6 959 6 6292
intracellular non-membrane-bounded organelle 1.2371E-5 6 959 6 6292
organelle lumen 6.864E-5 6 660 5 6292
intracellular organelle lumen 6.864E-5 6 660 5 6292
membrane-enclosed lumen 9.1664E-5 6 700 5 6292
nuclear envelope 5.8088E-4 6 199 3 6292
nuclear part 8.4241E-4 6 1103 5 6292
nucleus 1.1592E-3 6 2041 6 6292
small nucleolar ribonucleoprotein complex 1.8804E-3 6 72 2 6292
box C/D snoRNP complex 1.9064E-3 6 2 1 6292
nuclear outer membrane 2.6729E-3 6 86 2 6292
nuclear membrane 3.389E-3 6 97 2 6292
endomembrane system 4.3509E-3 6 398 3 6292
envelope 8.5521E-3 6 505 3 6292
organelle envelope 8.5521E-3 6 505 3 6292
ribonucleoprotein complex 8.9879E-3 6 514 3 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

rRNA metabolic process 2.684E-8 6 137 5 6292
ncRNA metabolic process 6.3506E-7 6 257 5 6292
rRNA processing 2.3759E-6 6 128 4 6292
ribosome biogenesis 2.8028E-6 6 346 5 6292
ribonucleoprotein complex biogenesis 4.1287E-6 6 374 5 6292
RNA metabolic process 1.1988E-5 6 954 6 6292
maturation of SSU-rRNA 1.5357E-5 6 59 3 6292
ncRNA processing 1.8849E-5 6 215 4 6292
cellular component biogenesis 8.7868E-5 6 694 5 6292
rRNA modification 1.1517E-4 6 18 2 6292
nucleic acid metabolic process 1.283E-4 6 1415 6 6292
RNA processing 1.7827E-4 6 380 4 6292
nucleobase, nucleoside, nucleotide and nucleic acid metabolic process 2.3599E-4 6 1566 6 6292
cellular nitrogen compound metabolic process 4.9256E-4 6 1770 6 6292
nitrogen compound metabolic process 5.2873E-4 6 1791 6 6292
gene expression 1.746E-3 6 1283 5 6292
RNA modification 1.7782E-3 6 70 2 6292
cellular macromolecule metabolic process 2.2844E-3 6 2285 6 6292
macromolecule metabolic process 2.6967E-3 6 2349 6 6292
regulation of transcription, mating-type specific 4.7604E-3 6 5 1 6292
snoRNA 3'-end processing 4.7604E-3 6 5 1 6292
snoRNA processing 6.6592E-3 6 7 1 6292
primary metabolic process 9.4808E-3 6 2896 6 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

RNA binding 3.4488E-3 6 367 3 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle