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View Protein Complex Details

Complex Overview

From Publication: Riffle <i>et al</i>. (2010) (Unpublished Data)
Notes: Complex predicted from the combined set of Gavin (2002), Gavin (2006), Ho (2002) and Krogan (2006); at p-value cutoff of 1E-7
Complex Size: 8 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

nucleolus 3.3636E-10 8 211 7 6292
nuclear lumen 7.205E-8 8 453 7 6292
non-membrane-bounded organelle 2.8409E-7 8 959 8 6292
intracellular non-membrane-bounded organelle 2.8409E-7 8 959 8 6292
organelle lumen 9.8757E-7 8 660 7 6292
intracellular organelle lumen 9.8757E-7 8 660 7 6292
membrane-enclosed lumen 1.4845E-6 8 700 7 6292
nuclear part 3.3951E-5 8 1103 7 6292
nucleus 1.2145E-4 8 2041 8 6292
Noc2p-Noc3p complex 2.5415E-3 8 2 1 6292
Noc1p-Noc2p complex 2.5415E-3 8 2 1 6292
organelle part 4.4856E-3 8 2282 7 6292
intracellular organelle part 4.4856E-3 8 2282 7 6292
Noc complex 6.3431E-3 8 5 1 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

ribosome biogenesis 1.094E-8 8 346 7 6292
ribonucleoprotein complex biogenesis 1.8872E-8 8 374 7 6292
cellular component biogenesis 1.3986E-6 8 694 7 6292
rRNA metabolic process 1.4075E-5 8 137 4 6292
ribosome assembly 5.4212E-5 8 64 3 6292
organelle assembly 6.797E-5 8 69 3 6292
ribonucleoprotein complex assembly 1.6068E-4 8 92 3 6292
ncRNA metabolic process 1.6718E-4 8 257 4 6292
rRNA processing 4.2742E-4 8 128 3 6292
ribosomal large subunit assembly 1.1316E-3 8 41 2 6292
cellular macromolecular complex assembly 1.1976E-3 8 182 3 6292
ncRNA processing 1.9402E-3 8 215 3 6292
ribosomal subunit assembly 2.0312E-3 8 55 2 6292
ribosomal large subunit biogenesis 2.8269E-3 8 65 2 6292
RNA metabolic process 2.9766E-3 8 954 5 6292
cellular macromolecular complex subunit organization 3.31E-3 8 259 3 6292
macromolecular complex assembly 4.1746E-3 8 281 3 6292
regulation of transcription, mating-type specific 6.3431E-3 8 5 1 6292
macromolecular complex subunit organization 8.1895E-3 8 357 3 6292
RNA processing 9.7426E-3 8 380 3 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

5S rRNA binding 1.4147E-6 8 2 2 6292
rRNA binding 1.6826E-4 8 16 2 6292
RNA binding 6.6069E-4 8 367 4 6292
7S RNA binding 1.2715E-3 8 1 1 6292
nucleic acid binding 6.1432E-3 8 666 4 6292
rRNA primary transcript binding 6.3431E-3 8 5 1 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle