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View Protein Complex Details

Complex Overview

From Publication: Riffle <i>et al</i>. (2010) (Unpublished Data)
Notes: Complex predicted from the combined set of Gavin (2002), Gavin (2006), Ho (2002) and Krogan (2006); at p-value cutoff of 1E-7
Complex Size: 7 proteins

Complex Member Proteins

Protein

GO Cellular Component GO Biological Process GO Molecular Function
ECM16
  • mitochondrion
  • nucleolus
  • small nucleolar ribonucleoprotein complex
  • maturation of SSU-rRNA
  • ribosome biogenesis
  • RNA helicase activity
  • KRE33
  • nucleolus
  • ribosome biogenesis
  • molecular_function
  • RPS13
  • ribonucleoprotein complex
  • cytosolic small ribosomal subunit
  • cytoplasm
  • 90S preribosome
  • ribosome
  • intracellular
  • translation
  • structural constituent of ribosome
  • RPS8B, RPS8A
  • ribonucleoprotein complex
  • cytosolic small ribosomal subunit
  • cytoplasm
  • 90S preribosome
  • ribosome
  • intracellular
  • regulation of translation
  • maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
  • translation
  • structural constituent of ribosome
  • RRP12
  • nucleus
  • ribosome
  • maturation of SSU-rRNA
  • ribosome biogenesis
  • molecular_function
  • UTP20
  • cytoplasm
  • nuclear outer membrane
  • nucleolus
  • small nucleolar ribonucleoprotein complex
  • endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
  • endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
  • ribosome biogenesis
  • endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
  • rRNA processing
  • snoRNA binding
  • UTP22
  • nucleus
  • nuclear outer membrane
  • nucleolus
  • small nucleolar ribonucleoprotein complex
  • maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
  • ribosome biogenesis
  • rRNA processing
  • snoRNA binding
  • Cellular Component Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    P-value

    A

    B

    I

    T

    non-membrane-bounded organelle 1.8755E-6 7 959 7 6292
    intracellular non-membrane-bounded organelle 1.8755E-6 7 959 7 6292
    ribonucleoprotein complex 1.8849E-6 7 514 6 6292
    nucleolus 3.9747E-5 7 211 4 6292
    small nucleolar ribonucleoprotein complex 4.8669E-5 7 72 3 6292
    90S preribosome 1.4316E-4 7 17 2 6292
    preribosome 5.8524E-4 7 34 2 6292
    cytosolic small ribosomal subunit 7.3181E-4 7 38 2 6292
    nuclear lumen 7.7894E-4 7 453 4 6292
    macromolecular complex 1.6651E-3 7 1635 6 6292
    small ribosomal subunit 2.6853E-3 7 73 2 6292
    ribosome 2.9533E-3 7 290 3 6292
    organelle lumen 3.2392E-3 7 660 4 6292
    intracellular organelle lumen 3.2392E-3 7 660 4 6292
    nuclear outer membrane 3.7089E-3 7 86 2 6292
    membrane-enclosed lumen 4.0336E-3 7 700 4 6292
    nuclear membrane 4.6971E-3 7 97 2 6292
    cytosolic ribosome 5.0837E-3 7 101 2 6292
    cytosolic part 7.3476E-3 7 122 2 6292

    Biological Process Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    P-value

    A

    B

    I

    T

    maturation of SSU-rRNA 1.2631E-9 7 59 5 6292
    rRNA processing 6.5525E-8 7 128 5 6292
    rRNA metabolic process 9.2297E-8 7 137 5 6292
    ribosome biogenesis 1.7714E-7 7 346 6 6292
    maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 2.4008E-7 7 13 3 6292
    ribonucleoprotein complex biogenesis 2.8234E-7 7 374 6 6292
    ncRNA processing 8.837E-7 7 215 5 6292
    ncRNA metabolic process 2.1485E-6 7 257 5 6292
    cellular component biogenesis 1.1204E-5 7 694 6 6292
    RNA processing 1.4865E-5 7 380 5 6292
    gene expression 4.1171E-4 7 1283 6 6292
    RNA metabolic process 1.2754E-3 7 954 5 6292
    ncRNA 5'-end processing 3.3344E-3 7 3 1 6292
    endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 3.3344E-3 7 3 1 6292
    endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 3.3344E-3 7 3 1 6292
    rRNA 5'-end processing 3.3344E-3 7 3 1 6292
    RNA 5'-end processing 3.3344E-3 7 3 1 6292
    maturation of 5.8S rRNA 4.4437E-3 7 4 1 6292
    cleavage involved in rRNA processing 4.4437E-3 7 4 1 6292
    maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 4.4437E-3 7 4 1 6292
    endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 4.4437E-3 7 4 1 6292
    endonucleolytic cleavage involved in rRNA processing 4.4437E-3 7 4 1 6292
    endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 4.4437E-3 7 4 1 6292
    nucleic acid metabolic process 7.9545E-3 7 1415 5 6292

    Molecular Function Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    P-value

    A

    B

    I

    T

    snoRNA binding 4.8586E-4 7 31 2 6292

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle