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View Protein Complex Details

Complex Overview

From Publication: Riffle <i>et al</i>. (2010) (Unpublished Data)
Notes: Complex predicted from the combined set of Gavin (2002), Gavin (2006), Ho (2002) and Krogan (2006); at p-value cutoff of 1E-7
Complex Size: 5 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

ribosomal large subunit assembly 2.5457E-6 5 41 3 6292
ribosomal subunit assembly 6.2441E-6 5 55 3 6292
ribosome assembly 9.8949E-6 5 64 3 6292
ribosomal large subunit biogenesis 1.0371E-5 5 65 3 6292
organelle assembly 1.2428E-5 5 69 3 6292
ribonucleoprotein complex assembly 2.9624E-5 5 92 3 6292
ribosome biogenesis 4.3019E-5 5 346 4 6292
ribonucleoprotein complex biogenesis 5.8585E-5 5 374 4 6292
cellular macromolecular complex assembly 2.281E-4 5 182 3 6292
cellular macromolecular complex subunit organization 6.4832E-4 5 259 3 6292
cellular component biogenesis 6.6989E-4 5 694 4 6292
macromolecular complex assembly 8.2425E-4 5 281 3 6292
GTP biosynthetic process 1.5888E-3 5 2 1 6292
macromolecular complex subunit organization 1.6626E-3 5 357 3 6292
cellular component assembly 2.072E-3 5 385 3 6292
GTP metabolic process 5.552E-3 5 7 1 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

rRNA binding 6.0363E-5 5 16 2 6292
7S RNA binding 7.9466E-4 5 1 1 6292
5S rRNA binding 1.5888E-3 5 2 1 6292
RNA binding 1.8021E-3 5 367 3 6292
IMP dehydrogenase activity 2.3825E-3 5 3 1 6292
rRNA primary transcript binding 3.9682E-3 5 5 1 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle