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View Protein Complex Details

Complex Overview

From Publication: Riffle <i>et al</i>. (2010) (Unpublished Data)
Notes: Complex predicted from the combined set of Gavin (2002), Gavin (2006), Ho (2002) and Krogan (2006); at p-value cutoff of 1E-7
Complex Size: 6 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

cytosolic ribosome 7.7539E-5 6 101 3 6292
90S preribosome 1.0242E-4 6 17 2 6292
cytosolic part 1.3633E-4 6 122 3 6292
preribosome 4.1945E-4 6 34 2 6292
non-membrane-bounded organelle 4.2731E-4 6 959 5 6292
intracellular non-membrane-bounded organelle 4.2731E-4 6 959 5 6292
ribosomal subunit 4.5377E-4 6 183 3 6292
cytosolic small ribosomal subunit 5.2472E-4 6 38 2 6292
ribonucleoprotein complex 5.7801E-4 6 514 4 6292
cytosol 1.644E-3 6 284 3 6292
ribosome 1.747E-3 6 290 3 6292
box C/D snoRNP complex 1.9064E-3 6 2 1 6292
small ribosomal subunit 1.9326E-3 6 73 2 6292
nuclear outer membrane 2.6729E-3 6 86 2 6292
nuclear membrane 3.389E-3 6 97 2 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

ribosome biogenesis 2.8028E-6 6 346 5 6292
ribonucleoprotein complex biogenesis 4.1287E-6 6 374 5 6292
maturation of SSU-rRNA 1.5357E-5 6 59 3 6292
maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 5.8841E-5 6 13 2 6292
cellular component biogenesis 8.7868E-5 6 694 5 6292
rRNA processing 1.5729E-4 6 128 3 6292
translation 1.7103E-4 6 376 4 6292
rRNA metabolic process 1.9253E-4 6 137 3 6292
ncRNA processing 7.2911E-4 6 215 3 6292
ribosomal subunit assembly 1.1004E-3 6 55 2 6292
regulation of translation 1.1817E-3 6 57 2 6292
ncRNA metabolic process 1.2291E-3 6 257 3 6292
posttranscriptional regulation of gene expression 1.3526E-3 6 61 2 6292
ribosome assembly 1.4882E-3 6 64 2 6292
regulation of cellular protein metabolic process 1.6787E-3 6 68 2 6292
organelle assembly 1.7281E-3 6 69 2 6292
gene expression 1.746E-3 6 1283 5 6292
regulation of protein metabolic process 1.9854E-3 6 74 2 6292
ribonucleoprotein complex assembly 3.0534E-3 6 92 2 6292
RNA processing 3.811E-3 6 380 3 6292
cellular protein metabolic process 9.4683E-3 6 1074 4 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

structural constituent of ribosome 1.7826E-5 6 212 4 6292
structural molecule activity 1.1393E-4 6 339 4 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle