YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Protein Complex Details

Complex Overview

From Publication: Riffle <i>et al</i>. (2010) (Unpublished Data)
Notes: Complex predicted from the combined set of Gavin (2002), Gavin (2006), Ho (2002) and Krogan (2006); at p-value cutoff of 1E-7
Complex Size: 7 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

non-membrane-bounded organelle 7.5345E-5 7 959 6 6292
intracellular non-membrane-bounded organelle 7.5345E-5 7 959 6 6292
cytosolic ribosome 1.3411E-4 7 101 3 6292
90S preribosome 1.4316E-4 7 17 2 6292
cytosolic part 2.352E-4 7 122 3 6292
preribosome 5.8524E-4 7 34 2 6292
cytosolic small ribosomal subunit 7.3181E-4 7 38 2 6292
ribosomal subunit 7.7712E-4 7 183 3 6292
nucleolus 1.1777E-3 7 211 3 6292
ribonucleoprotein complex 1.2617E-3 7 514 4 6292
small ribosomal subunit 2.6853E-3 7 73 2 6292
cytosol 2.7813E-3 7 284 3 6292
ribosome 2.9533E-3 7 290 3 6292
nuclear outer membrane 3.7089E-3 7 86 2 6292
nuclear membrane 4.6971E-3 7 97 2 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

ribosome biogenesis 9.3668E-6 7 346 5 6292
ribonucleoprotein complex biogenesis 1.3745E-5 7 374 5 6292
ribosomal subunit assembly 2.1584E-5 7 55 3 6292
ribosome assembly 3.4131E-5 7 64 3 6292
organelle assembly 4.2818E-5 7 69 3 6292
maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 8.2282E-5 7 13 2 6292
ribonucleoprotein complex assembly 1.015E-4 7 92 3 6292
cellular component biogenesis 2.7953E-4 7 694 5 6292
translation 3.8026E-4 7 376 4 6292
cellular macromolecular complex assembly 7.6476E-4 7 182 3 6292
ribosomal large subunit assembly 8.5225E-4 7 41 2 6292
regulation of translation 1.6447E-3 7 57 2 6292
maturation of SSU-rRNA 1.7614E-3 7 59 2 6292
posttranscriptional regulation of gene expression 1.8819E-3 7 61 2 6292
cellular macromolecular complex subunit organization 2.1334E-3 7 259 3 6292
ribosomal large subunit biogenesis 2.1344E-3 7 65 2 6292
regulation of cellular protein metabolic process 2.3339E-3 7 68 2 6292
macromolecular complex assembly 2.6978E-3 7 281 3 6292
regulation of protein metabolic process 2.7584E-3 7 74 2 6292
gene expression 5.0816E-3 7 1283 5 6292
macromolecular complex subunit organization 5.3413E-3 7 357 3 6292
cellular component assembly 6.6113E-3 7 385 3 6292
rRNA processing 8.0653E-3 7 128 2 6292
rRNA metabolic process 9.1999E-3 7 137 2 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

RNA binding 2.5214E-7 7 367 6 6292
rRNA binding 4.6941E-7 7 16 3 6292
nucleic acid binding 8.7797E-6 7 666 6 6292
structural constituent of ribosome 4.0495E-5 7 212 4 6292
structural molecule activity 2.5455E-4 7 339 4 6292
binding 4.326E-4 7 1294 6 6292
7S RNA binding 1.1125E-3 7 1 1 6292
5S rRNA binding 2.224E-3 7 2 1 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle