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View Protein Complex Details

Complex Overview

From Publication: Riffle <i>et al</i>. (2010) (Unpublished Data)
Notes: Complex predicted from the combined set of Gavin (2002), Gavin (2006), Ho (2002) and Krogan (2006); at p-value cutoff of 1E-7
Complex Size: 7 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

nucleolus 3.9747E-5 7 211 4 6292
non-membrane-bounded organelle 7.5345E-5 7 959 6 6292
intracellular non-membrane-bounded organelle 7.5345E-5 7 959 6 6292
90S preribosome 1.4316E-4 7 17 2 6292
preribosome 5.8524E-4 7 34 2 6292
nuclear lumen 7.7894E-4 7 453 4 6292
ribonucleoprotein complex 1.2617E-3 7 514 4 6292
Noc1p-Noc2p complex 2.224E-3 7 2 1 6292
organelle lumen 3.2392E-3 7 660 4 6292
intracellular organelle lumen 3.2392E-3 7 660 4 6292
membrane-enclosed lumen 4.0336E-3 7 700 4 6292
cytosolic ribosome 5.0837E-3 7 101 2 6292
Noc complex 5.552E-3 7 5 1 6292
cytosolic part 7.3476E-3 7 122 2 6292
preribosome, large subunit precursor 9.9746E-3 7 9 1 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

ribosomal large subunit assembly 5.3564E-8 7 41 4 6292
ribosomal subunit assembly 1.7942E-7 7 55 4 6292
ribosome assembly 3.3311E-7 7 64 4 6292
ribosomal large subunit biogenesis 3.5482E-7 7 65 4 6292
organelle assembly 4.5236E-7 7 69 4 6292
ribonucleoprotein complex assembly 1.4492E-6 7 92 4 6292
ribosome biogenesis 9.3668E-6 7 346 5 6292
ribonucleoprotein complex biogenesis 1.3745E-5 7 374 5 6292
cellular macromolecular complex assembly 2.215E-5 7 182 4 6292
cellular macromolecular complex subunit organization 8.9024E-5 7 259 4 6292
macromolecular complex assembly 1.2251E-4 7 281 4 6292
cellular component biogenesis 2.7953E-4 7 694 5 6292
macromolecular complex subunit organization 3.1112E-4 7 357 4 6292
cellular component assembly 4.1666E-4 7 385 4 6292
gene expression 5.0816E-3 7 1283 5 6292
translation 6.1847E-3 7 376 3 6292
rRNA processing 8.0653E-3 7 128 2 6292
rRNA metabolic process 9.1999E-3 7 137 2 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

RNA binding 1.2524E-5 7 367 5 6292
rRNA binding 1.2639E-4 7 16 2 6292
nucleic acid binding 2.2923E-4 7 666 5 6292
7S RNA binding 1.1125E-3 7 1 1 6292
structural constituent of ribosome 1.194E-3 7 212 3 6292
5S rRNA binding 2.224E-3 7 2 1 6292
structural molecule activity 4.6122E-3 7 339 3 6292
binding 5.2851E-3 7 1294 5 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle