YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Protein Complex Details

Complex Overview

From Publication: Riffle <i>et al</i>. (2010) (Unpublished Data)
Notes: Complex predicted from the combined set of Gavin (2002), Gavin (2006), Ho (2002) and Krogan (2006); at p-value cutoff of 1E-7
Complex Size: 7 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

90S preribosome 1.2705E-9 7 17 4 6292
preribosome 2.4595E-8 7 34 4 6292
cytosolic small ribosomal subunit 3.9087E-8 7 38 4 6292
small ribosomal subunit 5.6866E-7 7 73 4 6292
non-membrane-bounded organelle 1.8755E-6 7 959 7 6292
intracellular non-membrane-bounded organelle 1.8755E-6 7 959 7 6292
ribonucleoprotein complex 1.8849E-6 7 514 6 6292
cytosolic ribosome 2.1103E-6 7 101 4 6292
ribosome 3.9127E-6 7 290 5 6292
cytosolic part 4.503E-6 7 122 4 6292
ribosomal subunit 2.2637E-5 7 183 4 6292
cytosol 1.277E-4 7 284 4 6292
macromolecular complex 1.6651E-3 7 1635 6 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 2.4008E-7 7 13 3 6292
rRNA processing 5.4565E-6 7 128 4 6292
rRNA metabolic process 7.1582E-6 7 137 4 6292
translation 1.411E-5 7 376 5 6292
gene expression 1.4468E-5 7 1283 7 6292
regulation of translation 2.405E-5 7 57 3 6292
maturation of SSU-rRNA 2.6695E-5 7 59 3 6292
posttranscriptional regulation of gene expression 2.9525E-5 7 61 3 6292
regulation of cellular protein metabolic process 4.0976E-5 7 68 3 6292
ncRNA processing 4.2803E-5 7 215 4 6292
regulation of protein metabolic process 5.2849E-5 7 74 3 6292
ncRNA metabolic process 8.6358E-5 7 257 4 6292
ribosome biogenesis 2.7556E-4 7 346 4 6292
ribonucleoprotein complex biogenesis 3.725E-4 7 374 4 6292
RNA processing 3.9614E-4 7 380 4 6292
cellular macromolecule metabolic process 8.282E-4 7 2285 7 6292
macromolecule metabolic process 1.0051E-3 7 2349 7 6292
cellular protein metabolic process 2.2261E-3 7 1074 5 6292
protein metabolic process 2.8929E-3 7 1136 5 6292
cellular macromolecule biosynthetic process 3.5479E-3 7 1187 5 6292
macromolecule biosynthetic process 3.5757E-3 7 1189 5 6292
cellular component biogenesis 3.9065E-3 7 694 4 6292
primary metabolic process 4.3588E-3 7 2896 7 6292
cellular metabolic process 6.026E-3 7 3033 7 6292
metabolic process 7.9792E-3 7 3157 7 6292
regulation of gene expression 9.92E-3 7 445 3 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

structural constituent of ribosome 4.0495E-5 7 212 4 6292
rRNA binding 1.2639E-4 7 16 2 6292
structural molecule activity 2.5455E-4 7 339 4 6292
nucleic acid binding 3.3506E-3 7 666 4 6292
binding 5.2851E-3 7 1294 5 6292
RNA binding 5.7756E-3 7 367 3 6292
ribonucleoprotein binding 7.7654E-3 7 7 1 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle