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View Protein Complex Details

Complex Overview

From Publication: Riffle <i>et al</i>. (2010) (Unpublished Data)
Notes: Complex predicted from the combined set of Gavin (2002), Gavin (2006), Ho (2002) and Krogan (2006); at p-value cutoff of 1E-7
Complex Size: 5 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

nuclear cap binding complex 1.5153E-6 5 3 2 6292
RNA cap binding complex 7.5694E-6 5 6 2 6292
commitment complex 3.3242E-5 5 12 2 6292
U2-type spliceosomal complex 3.3242E-5 5 12 2 6292
spliceosomal complex 4.9341E-4 5 45 2 6292
eukaryotic translation initiation factor 4F complex 3.1756E-3 5 4 1 6292
protein complex 4.5433E-3 5 1137 4 6292
ribonucleoprotein complex 4.783E-3 5 514 3 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

termination of RNA polymerase II transcription, poly(A)-independent 1.8149E-5 5 9 2 6292
termination of RNA polymerase II transcription 8.5935E-5 5 19 2 6292
transcription termination 1.0547E-4 5 21 2 6292
gene expression 3.5034E-4 5 1283 5 6292
cellular protein complex disassembly 3.7002E-4 5 39 2 6292
protein complex disassembly 3.7002E-4 5 39 2 6292
cellular macromolecular complex disassembly 3.8937E-4 5 40 2 6292
macromolecular complex disassembly 3.8937E-4 5 40 2 6292
cellular component disassembly 4.7163E-4 5 44 2 6292
RNA metabolic process 2.3107E-3 5 954 4 6292
nuclear mRNA splicing, via spliceosome 2.3763E-3 5 99 2 6292
RNA splicing, via transesterification reactions with bulged adenosine as nucleophile 2.424E-3 5 100 2 6292
RNA splicing, via transesterification reactions 2.7709E-3 5 107 2 6292
RNA splicing 4.1907E-3 5 132 2 6292
mRNA processing 5.815E-3 5 156 2 6292
cellular macromolecule metabolic process 6.2991E-3 5 2285 5 6292
macromolecule metabolic process 7.2329E-3 5 2349 5 6292
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay 8.7135E-3 5 11 1 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

nucleic acid binding 1.3109E-5 5 666 5 6292
RNA binding 5.4355E-5 5 367 4 6292
mRNA binding 2.9749E-4 5 35 2 6292
binding 3.6564E-4 5 1294 5 6292
RNA cap binding 1.5888E-3 5 2 1 6292
poly-purine tract binding 3.9682E-3 5 5 1 6292
poly(A) RNA binding 3.9682E-3 5 5 1 6292
single-stranded RNA binding 3.9682E-3 5 5 1 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle