From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
Notes: | Classifier used Gene Ontology annotations. [FDR: 0.069] [SVM Score: 0.50780185011] |
Complex Size: | 2 proteins |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
intracellular immature spore | 8.6401E-6 | 2 | 19 | 2 | 6292 |
ascospore-type prospore | 8.6401E-6 | 2 | 19 | 2 | 6292 |
prospore membrane | 8.6401E-6 | 2 | 19 | 2 | 6292 |
protein phosphatase type 1 complex | 2.224E-3 | 2 | 7 | 1 | 6292 |
protein serine/threonine phosphatase complex | 5.3968E-3 | 2 | 17 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
phospholipase D activity | 3.1786E-4 | 2 | 1 | 1 | 6292 |
phosphatase binding | 9.5344E-4 | 2 | 3 | 1 | 6292 |
protein phosphatase binding | 9.5344E-4 | 2 | 3 | 1 | 6292 |
protein phosphatase 1 binding | 9.5344E-4 | 2 | 3 | 1 | 6292 |
phospholipase activity | 3.1764E-3 | 2 | 10 | 1 | 6292 |
protein phosphatase type 1 regulator activity | 3.811E-3 | 2 | 12 | 1 | 6292 |
enzyme binding | 4.4455E-3 | 2 | 14 | 1 | 6292 |
phosphoric diester hydrolase activity | 4.7627E-3 | 2 | 15 | 1 | 6292 |
phosphatidylinositol-3-phosphate binding | 6.0308E-3 | 2 | 19 | 1 | 6292 |
lipase activity | 6.6645E-3 | 2 | 21 | 1 | 6292 |
phosphatase regulator activity | 7.2981E-3 | 2 | 23 | 1 | 6292 |
protein phosphatase regulator activity | 7.2981E-3 | 2 | 23 | 1 | 6292 |