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View Protein Complex Details

Complex Overview

From Publication: Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054
Notes: Classifier used Gene Ontology annotations. [FDR: 0.054] [SVM Score: 0.589858061667]
Complex Size: 2 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

replication fork 4.3504E-5 2 42 2 6292
chromosomal part 1.413E-3 2 237 2 6292
chromosome 1.8898E-3 2 274 2 6292
DNA replication factor C complex 3.4937E-3 2 11 1 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

negative regulation of DNA metabolic process 1.0611E-5 2 21 2 6292
regulation of DNA metabolic process 2.3495E-5 2 31 2 6292
DNA replication 3.791E-4 2 123 2 6292
negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process 8.1399E-4 2 180 2 6292
negative regulation of nitrogen compound metabolic process 8.1399E-4 2 180 2 6292
negative regulation of macromolecule metabolic process 9.2646E-4 2 192 2 6292
negative regulation of cellular metabolic process 1.0983E-3 2 209 2 6292
negative regulation of metabolic process 1.1088E-3 2 210 2 6292
negative regulation of cellular process 1.5726E-3 2 250 2 6292
negative regulation of biological process 1.6107E-3 2 253 2 6292
anatomical structure homeostasis 2.0592E-3 2 286 2 6292
telomere organization 2.0592E-3 2 286 2 6292
telomere maintenance 2.0592E-3 2 286 2 6292
negative regulation of DNA replication initiation 2.224E-3 2 7 1 6292
DNA replication checkpoint 2.224E-3 2 7 1 6292
regulation of transposition, DNA-mediated 2.5415E-3 2 8 1 6292
negative regulation of transposition, DNA-mediated 2.5415E-3 2 8 1 6292
transposition, DNA-mediated 2.5415E-3 2 8 1 6292
regulation of DNA replication initiation 2.5415E-3 2 8 1 6292
negative regulation of transposition 2.859E-3 2 9 1 6292
regulation of transposition 2.859E-3 2 9 1 6292
negative regulation of DNA replication 2.859E-3 2 9 1 6292
negative regulation of DNA recombination 3.811E-3 2 12 1 6292
homeostatic process 4.1951E-3 2 408 2 6292
regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process 4.3405E-3 2 415 2 6292
regulation of nitrogen compound metabolic process 4.3615E-3 2 416 2 6292
regulation of DNA replication 4.7627E-3 2 15 1 6292
regulation of DNA recombination 4.7627E-3 2 15 1 6292
regulation of macromolecule metabolic process 6.004E-3 2 488 2 6292
DNA integrity checkpoint 6.3477E-3 2 20 1 6292
regulation of primary metabolic process 6.6615E-3 2 514 2 6292
double-strand break repair via homologous recombination 6.9813E-3 2 22 1 6292
regulation of cellular metabolic process 7.2445E-3 2 536 2 6292
regulation of metabolic process 7.5452E-3 2 547 2 6292
regulation of biological quality 7.6561E-3 2 551 2 6292
chromosome organization 7.7677E-3 2 555 2 6292
recombinational repair 8.248E-3 2 26 1 6292
DNA metabolic process 8.631E-3 2 585 2 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T


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