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Protein Overview: FBpp0301888, FBp...

General Information:
Name(s) found: FBpp0301888 [FlyBase]
FBpp0293575 [FlyBase]
Description(s) found:
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  • gi|74868425|sp|Q9VD44.3|GLD2A_DROME RecName: Full=Poly(A) RNA polymerase gld-2 homolog A [NCBI NR]
  • gi|45550788|ref|NP_651012.2| CG5732 [Drosophila melanogaster] [NCBI NR]
  • gi|45446588|gb|AAF55959.3| CG5732 [Drosophila melanogaster] [NCBI NR]
  • Poly(A) RNA polymerase gld-2 homolog A OS=Drosophila melanogaster GN=Gld2 PE=1 SV=3 [Swiss-Prot]
  • type=protein; loc=3R:join(18038012..18040651,18040902..18041168,18041231..18042418); ID=FBpp0301888; name=Gld2-PC; parent=FBgn0038934,FBtr0310204; dbxref=FlyBase:FBpp0301888,FlyBase_Annotation_IDs:CG5732-PC,REFSEQ:NP_001262829,GB_protein:AGB96209; MD5=bee32c3626e0bec5d727d95012573acf; length=1364; release=r5.56; species=Dmel; [FlyBase]
  • type=protein; loc=3R:join(18038012..18040651,18040902..18041168,18041231..18042418); ID=FBpp0293575; name=Gld2-PB; parent=FBgn0038934,FBtr0305038; dbxref=REFSEQ:NP_651012,GB_protein:AAF55959,FlyBase:FBpp0293575,FlyBase_Annotation_IDs:CG5732-PB,modMine:FBpp0293575; MD5=bee32c3626e0bec5d727d95012573acf; length=1364; release=r5.56; species=Dmel; [FlyBase]
  • This gene is referred to in FlyBase by the symbol Dmel\Gld2 (CG5732, FBgn0038934). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 3R:18037546..18042854. It has the cytological map location 94A3. There is experimental evidence that it has the molecular function</span>: polynucleotide adenylyltransferase activity. There is experimental evidence that it is involved in the biological process</span>: long-term memory. 7 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. [FlyBase]
  • (AAF55959) CG5732-PA [DrosMelano7227.FASTAC.txt]
  • CG5732-PA [Drosophila melanogaster]gi|45550788|ref|NP_651012.2| CG5732-PA [Drosophila melanogaster] [nrdb_11152004_Chlamydomonas]
  • type=protein; loc=3R:join(18038012..18040651,18040902..18041168,18041231..18042418); ID=FBpp0083598; name=CG5732-PA; parent=FBgn0038934,FBtr0084200; dbxref=GB_protein:AAF55959.2,FlyBase:FBpp0083598,FlyBase_Annotation_IDs:CG5732-PA,GB_protein:AAF55959.3,RE [fly-100309-contam.fasta]
  • CG5732-PA [Drosophila melanogaster] [nr-271106-contam.fasta]
  • type=protein; loc=3R:join(18038012..18040651,18040902..18041168,18041231..18042418); ID=FBpp0083598; name=CG5732-PA; parent=FBgn0038934,FBtr0084200; dbxref=GB_protein:AAF55959.2,FlyBase:FBpp0083598,FlyBase_Annotation_IDs:CG5732-PA,GB_protein:AAF55959.3,REFSEQ:NP_651012,GB_protein:AAF55959; MD5=bee32c3626e0bec5d727d95012573acf; length=1364; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=3R:join(18038012..18040651,18040902..18041168,18041231..18042418); ID=FBpp0083598; name=Gld2-PA; parent=FBgn0038934,FBtr0084200; dbxref=GB_protein:AAF55959.2,FlyBase:FBpp0083598,FlyBase_Annotation_IDs:CG5732-PA,GB_protein:AAF55959.3,REFSEQ:NP_651012,GB_protein:AAF55959; MD5=bee32c3626e0bec5d727d95012573acf; length=1364; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • type=protein; loc=3R:join(18038012..18040651,18040902..18041168,18041231..18042418); ID=FBpp0301888; name=Gld2-PC; parent=FBgn0038934,FBtr0310204; dbxref=FlyBase:FBpp0301888,FlyBase_Annotation_IDs:CG5732-PC; MD5=bee32c3626e0bec5d727d95012573acf; length=1364; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • type=protein; loc=3R:join(18038012..18040651,18040902..18041168,18041231..18042418); ID=FBpp0293575; name=Gld2-PB; parent=FBgn0038934,FBtr0305038; dbxref=REFSEQ:NP_651012,GB_protein:AAF55959,FlyBase:FBpp0293575,FlyBase_Annotation_IDs:CG5732-PB,modMine:FBpp0293575; MD5=bee32c3626e0bec5d727d95012573acf; length=1364; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • type=protein; loc=3R:join(22212290..22214929,22215180..22215446,22215509..22216696); ID=FBpp0301888; name=Gld2-PC; parent=FBgn0038934,FBtr0310204; dbxref=FlyBase:FBpp0301888,FlyBase_Annotation_IDs:CG5732-PC,REFSEQ:NP_001262829,GB_protein:AGB96209; MD5=bee32c3626e0bec5d727d95012573acf; length=1364; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=3R:join(22212290..22214929,22215180..22215446,22215509..22216696); ID=FBpp0293575; name=Gld2-PB; parent=FBgn0038934,FBtr0305038; dbxref=REFSEQ:NP_651012,GB_protein:AAF55959,FlyBase:FBpp0293575,FlyBase_Annotation_IDs:CG5732-PB,modMine:FBpp0293575; MD5=bee32c3626e0bec5d727d95012573acf; length=1364; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=3R:join(22212290..22214929,22215180..22215446,22215509..22216696); ID=FBpp0301888; name=Gld2-PC; parent=FBgn0038934,FBtr0310204; dbxref=FlyBase:FBpp0301888,FlyBase_Annotation_IDs:CG5732-PC,REFSEQ:NP_001262829,GB_protein:AGB96209; MD5=bee32c3626e0bec5d727d95012573acf; length=1364; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • type=protein; loc=3R:join(22212290..22214929,22215180..22215446,22215509..22216696); ID=FBpp0293575; name=Gld2-PB; parent=FBgn0038934,FBtr0305038; dbxref=REFSEQ:NP_651012,GB_protein:AAF55959,FlyBase:FBpp0293575,FlyBase_Annotation_IDs:CG5732-PB,modMine:FBpp0293575; MD5=bee32c3626e0bec5d727d95012573acf; length=1364; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • Isoform of Q9VD44, Gld2, isoform C OS=Drosophila melanogaster GN=Gld2 PE=4 SV=1 [DROME.fasta.20160308]
  • FBpp0301888 type=protein; loc=3R:join(22212290..22214929,22215180..22215446,22215509..22216696); ID=FBpp0301888; name=Gld2-PC; parent=FBgn0038934,FBtr0310204; dbxref=FlyBase:FBpp0301888,FlyBase_Annotation_IDs:CG5732-PC,REFSEQ:NP_001262829,GB_protein:AGB96209; MD5=bee32c3626e0bec5d727d95012573acf; length=1364; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • FBpp0293575 type=protein; loc=3R:join(22212290..22214929,22215180..22215446,22215509..22216696); ID=FBpp0293575; name=Gld2-PB; parent=FBgn0038934,FBtr0305038; dbxref=REFSEQ:NP_651012,GB_protein:AAF55959,FlyBase:FBpp0293575,FlyBase_Annotation_IDs:CG5732-PB,modMine:FBpp0293575; MD5=bee32c3626e0bec5d727d95012573acf; length=1364; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • [fly-122215-dmel-6-09-contam.fasta]
  • type=protein; loc=3R:join(22212290..22214929,22215180..22215446,22215509..22216696); ID=FBpp0301888; name=Gld2-PC; parent=FBgn0038934,FBtr0310204; dbxref=FlyBase:FBpp0301888,FlyBase_Annotation_IDs:CG5732-PC,REFSEQ:NP_001262829,GB_protein:AGB96209,UniProt/Swiss-Prot:Q9VD44; MD5=bee32c3626e0bec5d727d95012573acf; length=1364; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
  • type=protein; loc=3R:join(22212290..22214929,22215180..22215446,22215509..22216696); ID=FBpp0293575; name=Gld2-PB; parent=FBgn0038934,FBtr0305038; dbxref=REFSEQ:NP_651012,GB_protein:AAF55959,FlyBase:FBpp0293575,FlyBase_Annotation_IDs:CG5732-PB,UniProt/Swiss-Prot:Q9VD44,modMine:FBpp0293575; MD5=bee32c3626e0bec5d727d95012573acf; length=1364; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
    • Organism: Drosophila melanogaster
    Length: 1364 amino acids

    Gene Ontology:
    Cellular Component: cytoplasm [IDA]
    neuron projection [IDA]
    nucleoplasm [IDA]
    Biological Process: long-term memory [IMP]
    Molecular Function: polynucleotide adenylyltransferase activity [IDA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTAMAMAAA ASSSAAAATA TTTAISNSTN TTASPATTNT INTTTKTITT SEVPLEPASN  60
   61 MAPKALEIED SGRNEPEDLE HGAAKPLEQR KTTVVHTCPR PPGGYKYSME FLYGIGSGMA 120
  121 GIPLNIPTPS SITPRTVRST APLLTTHMPL LTNMGVAPSR PSGIRYPGSA GGSNGTTVAA 180
  181 STTPSTTVTT SSGSPGSGAE AITSSVSSSG LPAAGLQAAQ FICQGYMPTG PQRRLWHAEN 240
  241 AVWQFDRNYP YNQAYSPPYG IPMMPVGFEH PYGQRIIYPG YYNQTPPGIN PAAVAGLTRT 300
  301 NRPVTQQPHI LTQPAVGTTE SSEEAPATLG NAPQVSSTWR YGRPGTHRGR HAVPTAAAPA 360
  361 LLHRDSKSFY NSIGSGMANG PRFKAPFVAN VRNFQAGAVA TVAAGGAATT AVVGTSAPAT 420
  421 GAASSSDQNV ATKRNHQGAA TQNNHRNRHN AKKGGKNSVG KELTSNSSES LSNSSSKSQL 480
  481 NKRPSSSSSI SPIKHPHRNY RNRMRYTATE PTEQKAATTT VPISNYQPPQ QSTSTVRRTS 540
  541 KFQGSNAYQA HTAAGRQQSR FYQSRHMDGY VFQSGHYMVY AAGAPPVGLR PGKSPVSEAT 600
  601 GAPPGAAAAT AAAATAVAAT AAAAEGGGAA EGGGAAAAPV TASSATLEGE QPLDSDFDQR 660
  661 QEFADLGLDP ANGGFSSDLE PNGIKQDTSE LDTHSCLISH PNSEVDGDDN QSLASFAPSV 720
  721 ESDDSDSELS DASVESVARD ILVSCLAVAT GAEEPDFSGP NLVPYGDMHY LKELDKKNPP 780
  781 TNGYRSHRPY HQSHYAYHSQ MSPRGLSCCG DMLNQHSEDL VFKLDQNQPD GIESGKNIFL 840
  841 REITEQPDNI SVASNLSCSP SASSSKSVLA PMASKSNITM PEENNDDDEL PLVVHNRYWR 900
  901 EFFGYTPADR FLLRAKFVEM RRPPKVMGCK NKWDPLSLSV WKKFLESQQT RHVYKIKMRL 960
  961 WRAIYTVAMK NYPRYGLYLV GSSISYFGSK CSDMDICMLA CTNPNIDSRM EAVYHLHVMK1020
 1021 ELLGRTNMFQ DFNLIEARVP ILRFTDRCHK VEVDINFNNS VGIRNTHLLY CYSQLDWRVR1080
 1081 PMALTVKQWA QYHNINNAKN MTISSYSLML MVIHFLQVGA SPPVLPCLHN LYPEKFGLLQ1140
 1141 PNDFGYVDMN EVMAPYQSDN SQTLGDLLLS FLHYYSVFDY GKYAISIRVG GVLPIEVCRA1200
 1201 ATAPKNDIHQ WNELCIEEPF DQTNTARSVY DTDTFERIKT IFVASYRRLD STRNLSAIFE1260
 1261 DYDGPTILMQ QPSVDSEIEL YEGQHHRLLP NRGSSRSNSA IPSPRPSILM VDKATTAIWD1320
 1321 DINNKPDHPV LSHSNNYDAT NECTGNGSLM GLKDNSVADK PPIA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..133] deduced N/A No confident structure predictions are available.
    2 View Details [134..320] MSA 2.053995 View MSA. No confident structure predictions are available.
    3 View Details [321..406] deduced N/A No confident structure predictions are available.
    4 View Details [407..526] PSI-BLAST 37.0 Structure of P. knowlesi DBL domain capable of binding human duffy antigen
    5 View Details [527..654] deduced N/A No confident structure predictions are available.
    6 View Details [655..896] deduced N/A No confident structure predictions are available.
    7 View Details [897..1364] PSI-BLAST 63.69897 Crystal structure of poly(A) polymerase in complex with 3'-dATP and magnesium chloride

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3 No functions predicted.
    4 No functions predicted.
    5 No functions predicted.
    6 No functions predicted.
    7
    Term Confidence Notes
  • binding
    		•  0.996283185303782 bayes_pls_golite062009
  • nucleotidyltransferase activity
    		•  0.943703677733022 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  0.72339234951343 bayes_pls_golite062009
  • protein binding
    		•  0.0986191444342778 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.0766350597400531 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
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