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Protein Overview: CG17838-PA

General Information:
Name(s) found: CG17838-PA / FBpp0083365 [FlyBase]
Description(s) found:
Found 17 descriptions.
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  • This gene is referred to in FlyBase by the symbol Dmel\CG17838 (CG17838, FBgn0038826). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 3R:16582451..16631963. It has the cytological map location 92F12-93A1. Based on sequence similarity, it is predicted to have molecular function</span>: mRNA binding. The biological processes in which it is involved are not known. 22 alleles are reported. No phenotypic data is available. It has 8 annotated transcripts and 8 annotated polypeptides. [FlyBase]
    • Organism: Drosophila melanogaster
    Length: 563 amino acids

    Gene Ontology:
    Cellular Component: precatalytic spliceosome [IDA]
    heterogeneous nuclear ribonucleoprotein complex [ISS]
    Biological Process: nuclear mRNA splicing, via spliceosome [IC]
    Molecular Function: nucleotide binding [IEA]
    nucleic acid binding [IEA]
    mRNA binding [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKFVSHNLG RDPYRTFSPE MYPLSSPLGP HGTEMAEGNG ELLDDINQKA DDRGDGERTE  60
   61 DYPKLLEYGL DKKVAGKLDE IYKTGKLAHA ELDERALDAL KEFPVDGALN VLGQFLESNL 120
  121 EHVSNKSAYL CGVMKTYRQK SRASQQGVAA PATVKGPDED KIKKILERTG YTLDVTTGQR 180
  181 KYGGPPPHWE GNVPGNGCEV FCGKIPKDMY EDELIPLFEN CGIIWDLRLM MDPMTGTNRG 240
  241 YAFVTFTNRE AAVNAVRQLD NHEIKPGKCL KINISVPNLR LFVGNIPKSK GKDEILEEFG 300
  301 KLTAGLYEVI IYSSPDDKKK NRGFCFLEYE SHKAASLAKR RLGTGRIKVW GCDIIVDWAD 360
  361 PQEEPDEQTM SKVKVLYVRN LTQDVSEDKL KEQFEQYGKV ERVKKIKDYA FIHFEDRDSA 420
  421 VEAMRGLNGK EIGASNIEVS LAKPPSDKKK KEEILRARER RMMQMMQARP GIVGNLSPTH 480
  481 PSIMSLTPMR PGARMPLRTP IPREYVVGKR KFDGGHQNPA DVKRRYPSGL IGNGGSWGSL 540
  541 PLPQQPLGTN GEQWYMDTFS AWS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..102] deduced N/A No confident structure predictions are available.
    2 View Details [103..190] PSI-BLAST 35.69897 Poly(A)-binding protein
    3 View Details [191..277] PSI-BLAST 11.221849 No description for 2dguA was found.
    4 View Details [278..479] FFAS03 5.29 Poly(A)-binding protein
    5 View Details [480..563] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • RNA binding
    		•  2.96087565414382 bayes_pls_golite062009
  • binding
    		•  2.29041217255208 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.91189490017911 bayes_pls_golite062009
  • mRNA binding
    		•  1.52245536665132 bayes_pls_golite062009
  • protein binding
    		•  0.0101134374085809 bayes_pls_golite062009
    3 No functions predicted.
    4
    Term Confidence Notes
  • RNA binding
    		•  2.55209579427288 bayes_pls_golite062009
  • binding
    		•  2.12674248708253 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.64322098035939 bayes_pls_golite062009
  • mRNA binding
    		•  1.10126462659919 bayes_pls_golite062009
    5 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle