| Protein: | CG17838-PA |
| Organism: | Drosophila melanogaster |
| Length: | 563 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG17838-PA.
| Description | E-value | Query Range |
Subject Range |
|
|
308.0 | [0..17] | [563..31] |
|
Region A: Residues: [1-102] |
1 11 21 31 41 51
| | | | | |
1 MNKFVSHNLG RDPYRTFSPE MYPLSSPLGP HGTEMAEGNG ELLDDINQKA DDRGDGERTE 60
61 DYPKLLEYGL DKKVAGKLDE IYKTGKLAHA ELDERALDAL KE
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [103-190] |
1 11 21 31 41 51
| | | | | |
1 FPVDGALNVL GQFLESNLEH VSNKSAYLCG VMKTYRQKSR ASQQGVAAPA TVKGPDEDKI 60
61 KKILERTGYT LDVTTGQRKY GGPPPHWE
|
| Detection Method: | |
| Confidence: | 35.69897 |
| Match: | 1cvjA |
| Description: | Poly(A)-binding protein |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 2.96087565414382 | bayes_pls_golite062009 |
| binding | 2.29041217255208 | bayes_pls_golite062009 |
| nucleic acid binding | 1.91189490017911 | bayes_pls_golite062009 |
| mRNA binding | 1.52245536665132 | bayes_pls_golite062009 |
| protein binding | 0.0101134374085809 | bayes_pls_golite062009 |
|
Region A: Residues: [191-277] |
1 11 21 31 41 51
| | | | | |
1 GNVPGNGCEV FCGKIPKDMY EDELIPLFEN CGIIWDLRLM MDPMTGTNRG YAFVTFTNRE 60
61 AAVNAVRQLD NHEIKPGKCL KINISVP
|
| Detection Method: | |
| Confidence: | 11.221849 |
| Match: | 2dguA |
| Description: | No description for 2dguA was found. |
|
Region A: Residues: [278-479] |
1 11 21 31 41 51
| | | | | |
1 NLRLFVGNIP KSKGKDEILE EFGKLTAGLY EVIIYSSPDD KKKNRGFCFL EYESHKAASL 60
61 AKRRLGTGRI KVWGCDIIVD WADPQEEPDE QTMSKVKVLY VRNLTQDVSE DKLKEQFEQY 120
121 GKVERVKKIK DYAFIHFEDR DSAVEAMRGL NGKEIGASNI EVSLAKPPSD KKKKEEILRA 180
181 RERRMMQMMQ ARPGIVGNLS PT
|
| Detection Method: | |
| Confidence: | 5.29 |
| Match: | 1cvjA |
| Description: | Poly(A)-binding protein |
| Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 2.55209579427288 | bayes_pls_golite062009 |
| binding | 2.12674248708253 | bayes_pls_golite062009 |
| nucleic acid binding | 1.64322098035939 | bayes_pls_golite062009 |
| mRNA binding | 1.10126462659919 | bayes_pls_golite062009 |
|
Region A: Residues: [480-563] |
1 11 21 31 41 51
| | | | | |
1 HPSIMSLTPM RPGARMPLRT PIPREYVVGK RKFDGGHQNP ADVKRRYPSG LIGNGGSWGS 60
61 LPLPQQPLGT NGEQWYMDTF SAWS
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
