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Protein Overview: FBpp0294016, FBp...

General Information:
Name(s) found: FBpp0307139 [FlyBase]
FBpp0294016 [FlyBase]
squ-PA / FBpp0099829 [FlyBase]
Description(s) found:
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  • gi|45552399|ref|NP_995722.1| squash [Drosophila melanogaster] [NCBI NR]
  • gi|45445150|gb|AAS64715.1| squash [Drosophila melanogaster] [NCBI NR]
  • gi|41615888|tpg|DAA03702.1| TPA_inf: HDC02844 [Drosophila melanogaster] [NCBI NR]
  • gi|255523000|gb|ACU12392.1| RE53210p [Drosophila melanogaster] [NCBI NR]
  • type=protein; loc=2L:16680719..16681444; ID=FBpp0307139; name=squ-PC; parent=FBgn0002652,FBtr0335140; dbxref=REFSEQ:NP_001260507,GB_protein:AGB93042,FlyBase:FBpp0307139,FlyBase_Annotation_IDs:CG4711-PC; MD5=6ab50ccdc022470699e81204188423a5; length=241; release=r5.56; species=Dmel; [FlyBase]
  • type=protein; loc=2L:16680719..16681444; ID=FBpp0294016; name=squ-PB; parent=FBgn0002652,FBtr0305565; dbxref=REFSEQ:NP_001246044,GB_protein:AFH03718,FlyBase:FBpp0294016,FlyBase_Annotation_IDs:CG4711-PB; MD5=6ab50ccdc022470699e81204188423a5; length=241; release=r5.56; species=Dmel; [FlyBase]
  • The gene squash is referred to in FlyBase by the symbol Dmel\squ (CG4711, FBgn0002652). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 2L:16680056..16681444. It has the cytological map location 36A10. Its molecular function is unknown. There is experimental evidence that it is involved in the biological process</span>: gene silencing by RNA; oogenesis; dorsal appendage formation. 8 alleles are reported. The phenotypes of these alleles are annotated with: egg; oocyte; karyosome; dorsal appendage. It has one annotated transcript and one annotated polypeptide. [FlyBase]
  • (AAS64715) CG4711-PA [DrosMelano7227.FASTAC.txt]
  • CG4711-PA [Drosophila melanogaster]gi|45552399|ref|NP_995722.1| CG4711-PA [Drosophila melanogaster]gi|41615888|tpg|DAA03702.1| TPA: HDC02844 [Drosophila melanogaster] [nrdb_11152004_Chlamydomonas]
  • type=protein; loc=2L:16680719..16681444; ID=FBpp0099829; name=squ-PA; parent=FBgn0002652,FBtr0080887; dbxref=FlyBase_Annotation_IDs:CG4711-PA,FlyBase:FBpp0099829,GB_protein:AAS64715.1,REFSEQ:NP_995722,GB_protein:AAS64715; MD5=6ab50ccdc022470699e8120418842 [fly-100309-contam.fasta]
  • CG4711-PA [Drosophila melanogaster] [nr-271106-contam.fasta]
  • squash CG4711-PA [Drosophila melanogaster] [nr-271106-contam.fasta]
  • TPA_inf: HDC02844 [Drosophila melanogaster] [nr-271106-contam.fasta]
  • type=protein; loc=2L:16680719..16681444; ID=FBpp0099829; name=squ-PA; parent=FBgn0002652,FBtr0080887; dbxref=FlyBase_Annotation_IDs:CG4711-PA,FlyBase:FBpp0099829,GB_protein:AAS64715.1,REFSEQ:NP_995722,GB_protein:AAS64715; MD5=6ab50ccdc022470699e81204188423a5; length=241; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=2L:16680719..16681444; ID=FBpp0099829; name=squ-PA; parent=FBgn0002652,FBtr0080887; dbxref=FlyBase_Annotation_IDs:CG4711-PA,FlyBase:FBpp0099829,GB_protein:AAS64715.1,REFSEQ:NP_995722,GB_protein:AAS64715; MD5=6ab50ccdc022470699e81204188423a5; length=241; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • HDC02844 OS=Drosophila melanogaster GN=squ PE=2 SV=1 [UniProt_drosophila_07-01-2011_reversed.fasta]
  • type=protein; loc=2L:16680719..16681444; ID=FBpp0099829; name=squ-PA; parent=FBgn0002652,FBtr0080887; dbxref=FlyBase_Annotation_IDs:CG4711-PA,FlyBase:FBpp0099829,GB_protein:AAS64715.1,REFSEQ:NP_995722,GB_protein:AAS64715,FlyMine:FBpp0099829,modMine:FBpp0099829; MD5=6ab50ccdc022470699e81204188423a5; length=241; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • type=protein; loc=2L:16680719..16681444; ID=FBpp0294016; name=squ-PB; parent=FBgn0002652,FBtr0305565; dbxref=REFSEQ:NP_001246044,GB_protein:AFH03718,FlyBase:FBpp0294016,FlyBase_Annotation_IDs:CG4711-PB; MD5=6ab50ccdc022470699e81204188423a5; length=241; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • type=protein; loc=2L:16680719..16681444; ID=FBpp0099829; name=squ-PA; parent=FBgn0267347,FBtr0080887; dbxref=FlyBase_Annotation_IDs:CG4711-PA,FlyBase:FBpp0099829,GB_protein:AAS64715.1,REFSEQ:NP_995722,GB_protein:AAS64715,FlyMine:FBpp0099829,modMine:FBpp0099829; MD5=6ab50ccdc022470699e81204188423a5; length=241; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=2L:16680719..16681444; ID=FBpp0294016; name=squ-PB; parent=FBgn0267347,FBtr0305565; dbxref=REFSEQ:NP_001246044,GB_protein:AFH03718,FlyBase:FBpp0294016,FlyBase_Annotation_IDs:CG4711-PB; MD5=6ab50ccdc022470699e81204188423a5; length=241; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=2L:16680719..16681444; ID=FBpp0307139; name=squ-PC; parent=FBgn0267347,FBtr0335140; dbxref=REFSEQ:NP_001260507,GB_protein:AGB93042,FlyBase:FBpp0307139,FlyBase_Annotation_IDs:CG4711-PC; MD5=6ab50ccdc022470699e81204188423a5; length=241; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=2L:16680719..16681444; ID=FBpp0099829; name=squ-PA; parent=FBgn0267347,FBtr0080887; dbxref=FlyBase_Annotation_IDs:CG4711-PA,FlyBase:FBpp0099829,GB_protein:AAS64715.1,REFSEQ:NP_995722,GB_protein:AAS64715,FlyMine:FBpp0099829,modMine:FBpp0099829; MD5=6ab50ccdc022470699e81204188423a5; length=241; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • type=protein; loc=2L:16680719..16681444; ID=FBpp0294016; name=squ-PB; parent=FBgn0267347,FBtr0305565; dbxref=REFSEQ:NP_001246044,GB_protein:AFH03718,FlyBase:FBpp0294016,FlyBase_Annotation_IDs:CG4711-PB; MD5=6ab50ccdc022470699e81204188423a5; length=241; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • type=protein; loc=2L:16680719..16681444; ID=FBpp0307139; name=squ-PC; parent=FBgn0267347,FBtr0335140; dbxref=REFSEQ:NP_001260507,GB_protein:AGB93042,FlyBase:FBpp0307139,FlyBase_Annotation_IDs:CG4711-PC; MD5=6ab50ccdc022470699e81204188423a5; length=241; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • FBpp0099829 type=protein; loc=2L:16680719..16681444; ID=FBpp0099829; name=squ-PA; parent=FBgn0267347,FBtr0080887; dbxref=FlyBase_Annotation_IDs:CG4711-PA,FlyBase:FBpp0099829,GB_protein:AAS64715.1,REFSEQ:NP_995722,GB_protein:AAS64715,FlyMine:FBpp0099829,modMine:FBpp0099829; MD5=6ab50ccdc022470699e81204188423a5; length=241; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • FBpp0294016 type=protein; loc=2L:16680719..16681444; ID=FBpp0294016; name=squ-PB; parent=FBgn0267347,FBtr0305565; dbxref=REFSEQ:NP_001246044,GB_protein:AFH03718,FlyBase:FBpp0294016,FlyBase_Annotation_IDs:CG4711-PB; MD5=6ab50ccdc022470699e81204188423a5; length=241; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • FBpp0307139 type=protein; loc=2L:16680719..16681444; ID=FBpp0307139; name=squ-PC; parent=FBgn0267347,FBtr0335140; dbxref=REFSEQ:NP_001260507,GB_protein:AGB93042,FlyBase:FBpp0307139,FlyBase_Annotation_IDs:CG4711-PC; MD5=6ab50ccdc022470699e81204188423a5; length=241; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • [fly-122215-dmel-6-09-contam.fasta]
  • type=protein; loc=2L:16680719..16681444; ID=FBpp0099829; name=squ-PA; parent=FBgn0267347,FBtr0080887; dbxref=FlyBase_Annotation_IDs:CG4711-PA,FlyBase:FBpp0099829,GB_protein:AAS64715.1,REFSEQ:NP_995722,GB_protein:AAS64715,UniProt/TrEMBL:Q7KT57,FlyMine:FBpp0099829,modMine:FBpp0099829; MD5=6ab50ccdc022470699e81204188423a5; length=241; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
  • type=protein; loc=2L:16680719..16681444; ID=FBpp0294016; name=squ-PB; parent=FBgn0267347,FBtr0305565; dbxref=REFSEQ:NP_001246044,GB_protein:AFH03718,FlyBase:FBpp0294016,FlyBase_Annotation_IDs:CG4711-PB,UniProt/TrEMBL:Q7KT57; MD5=6ab50ccdc022470699e81204188423a5; length=241; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
  • type=protein; loc=2L:16680719..16681444; ID=FBpp0307139; name=squ-PC; parent=FBgn0267347,FBtr0335140; dbxref=REFSEQ:NP_001260507,GB_protein:AGB93042,FlyBase:FBpp0307139,FlyBase_Annotation_IDs:CG4711-PC,UniProt/TrEMBL:Q7KT57; MD5=6ab50ccdc022470699e81204188423a5; length=241; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
    • Organism: Drosophila melanogaster
    Length: 241 amino acids

    Gene Ontology:
    Cellular Component: P granule [IDA]
    Biological Process: oogenesis [IMP][TAS]
    dorsal appendage formation [IMP]
    gene silencing by RNA [IMP]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAWVPNSQFE DDLVDMEPDF NFVHGQLAYD MKKQGEFWPR PKCTYEYLKS REKRNSELEN  60
   61 IHGSRGGTGR DIRQSLQLME NIQKIAGTRP LGEHATMKDW EDESTNELEA LAMMRHFGMM 120
  121 SMATDSLPVL PEVKPPEGPI KIIRNGRKQF PLITDPEFFK PRKIPRTKNS SSSSSYHTAN 180
  181 SSISSFSLYE SAASDLDSSK KQGEIKASKS EKYLEVPYKQ LAESYDQEVE SPVQFGNQFN 240
  241 E

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data



    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle