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Protein Overview: yu-PC

General Information:
Name(s) found: yu-PC / FBpp0070761 [FlyBase]
Description(s) found:
Found 18 descriptions.
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  • The gene yu is referred to in FlyBase by the symbol Dmel\yu (CG3249, FBgn0029764). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is X:5307840..5314896. It has the cytological map location 4F9-4F10. Based on sequence similarity, it is predicted to have molecular function</span>: protein kinase A binding. There is experimental evidence that it is involved in the biological process</span>: long-term memory. 14 alleles are reported. The phenotype of these alleles is annotated with: intersegmental nerve. It has 3 annotated transcripts and 3 annotated polypeptides. [FlyBase]
    • Organism: Drosophila melanogaster
    Length: 607 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: long-term memory [IMP]
    protein localization [ISS]
    Molecular Function: RNA binding [IEA]
    protein kinase A binding [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLPCRCCCC SGKVTIFQYS AKMVSGRPLL YLSLPGVAFI LGVFWFRRRY KNCLDKPDDE  60
   61 DSSAINDSSI EPTVQARKAN GVLQNGKLPQ QSASKSMNIN GTLVNGSGSG SGSSSDEKDS 120
  121 PTTMLYGKSA PIKIQSNGRT SNGKHQQQID SEILKSKIQD AEHKTLCSID EDFENLSSPR 180
  181 DLPDSVNTRV SFYNRKATQK TVEPVVIKAT RTPKISPENS FLDTNYTNKE CEQNNNCEPK 240
  241 EEPSKKEADQ EELEQDQEQT VLKEEVVDSN GNQKRNVDAA SPSLSICSVQ SGDSGKGSSL 300
  301 PRSEATRVKT TYEFLFPISL IGHLYGRKRA FINQIKAKTL ASVSVGKNPY SGKVRICTIE 360
  361 GTESEIDAAL AMIRQRLPAK RYPNFTMQRI HFALPQTIVP LSTESLYNLQ LKLIEGINND 420
  421 VVVSAVLSGS HIFIQHPLHP SHPSLPLLQK QLYDSYSTME APLLPSLELS AVCVIPINDV 480
  481 WYRVQIVDTD PEDEERCVIK FLDFGGYMNV GFNTLRQIRT DFMNVPFQST ECILSNIEPI 540
  541 GGTWSIEAAE ILNKLTKGIV LQAQVAGYNS HNLPEIFLFA SLGPNNVIFI NKELVGRKLA 600
  601 KWVEMSD

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..203] PSI-BLAST 8.69897 Solution structure of KH domain in FUSE binding protein 1
    2 View Details [204..378] PSI-BLAST 15.30103 Far upstream binding element, FBP, KH3 and KH4 domains
    3 View Details [379..607] PSI-BLAST 30.69897 No description for 2o4xA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  1.63535971389028 bayes_pls_golite062009
  • RNA binding
    		•  1.16361089268969 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.711581767271173 bayes_pls_golite062009
  • protein binding
    		•  0.427606060593007 bayes_pls_golite062009
    2
    Term Confidence Notes
  • binding
    		•  1.63535971389028 bayes_pls_golite062009
  • RNA binding
    		•  1.16361089268969 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.711581767271173 bayes_pls_golite062009
  • protein binding
    		•  0.427606060593007 bayes_pls_golite062009
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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