YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: YDJF_ECOLI

General Information:
Name(s) found: YDJF_ECOLI [Swiss-Prot]
Description(s) found:
SHOW ONLY BEST
  • pir||B64937 hypothetical protein b1770 - Escherichia coli (strain K-12) [NCBI NR]
  • gi|3183286|sp|P77721.1|YDJF_ECOLI RecName: Full=Uncharacterized HTH-type transcriptional regulator ydjF [NCBI NR]
  • dbj|BAA15568.1| L-fucose operon activator. [Escherichia coli] [NCBI NR]
  • gi|1742881|dbj|BAA15561.1| predicted DNA-binding transcriptional regulator [Escherichia coli W3110] [NCBI NR]
  • Putative HTH-type transcriptional regulator ydjF - Escherichia coli [Swiss-Prot]
  • putative DEOR-type transcriptional regulator; putative transcriptional regulator (DeoR family) [Escherichia coli K12]gi|1788069|gb|AAC74840.1| putative DEOR-type transcriptional regulator; putative transcriptional regulator (DeoR family) [Escherichia col [nrdb_11152004_Chlamydomonas]
  • Uncharacterized HTH-type transcriptional regulator ydjF [NCBI-RefSeq_human_na_08-09-2006_reversed.fasta]
  • Uncharacterized HTH-type transcriptional regulator ydjF OS=Escherichia coli (strain K12) GN=ydjF PE=1 SV=1 [uniprot-Ecoli-reviewed-110511.fasta]
  • Uncharacterized HTH-type transcriptional regulator YdjF OS=Escherichia coli (strain K12) GN=ydjF PE=3 SV=1 [uniprot_sprot.fasta.20160308]
    • Organism: Escherichia coli
    Length: 252 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAKDRIQAI KQMVANDKKV TVSNLSGIFQ VTEETIRRDL EKLEDEGFLT RTYGGAVLNT  60
   61 AMLTENIHFY KRASSFYEEK QLIARKALPF IDNKTTMAAD SSSTVMELLK LLQDRSGLTL 120
  121 LTNSAEAIHV LAQSEIKVVS TGGELNKNTL SLQGRITKEI IRRYHVDIMV MSCKGLDINS 180
  181 GALDSNEAEA EIKKTMIRQA TEVALLVDHS KFDRKAFVQL ADFSHINYII TDKSPGAEWI 240
  241 AFCKDNNIQL VW

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..65] PSI-BLAST 6.69897 LprA
    2 View Details [66..252] PSI-BLAST 25.30103 Deletion mutant of SUCCINYL-COA:3-KETOACID COA TRANSFERASE FROM PIG HEART

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • transcription regulator activity
    		•  3.98990675336286 bayes_pls_golite062009
  • DNA binding
    		•  3.4273272886116 bayes_pls_golite062009
  • nucleic acid binding
    		•  3.38054693035398 bayes_pls_golite062009
  • transcription factor activity
    		•  2.80110428028438 bayes_pls_golite062009
  • binding
    		•  2.18911933843505 bayes_pls_golite062009
  • transcription activator activity
    		•  0.53294679084865 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  0.53285802828572 bayes_pls_golite062009
  • transcription repressor activity
    		•  0.513853050429619 bayes_pls_golite062009
  • protein binding
    		•  0.035220363090062 bayes_pls_golite062009
    2
    Term Confidence Notes
  • catalytic activity
    		•  1.68776709414398 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.965520574888216 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.769423781192988 bayes_pls_golite062009
  • DNA binding
    		•  0.223734115868557 bayes_pls_golite062009
  • binding
    		•  0.199466104892993 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle