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Protein Overview: YAFC_ECOLI

General Information:
Name(s) found: YAFC_ECOLI [Swiss-Prot]
Description(s) found:
Found 11 descriptions.
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  • Putative HTH-type transcriptional regulator yafC - Escherichia coli [Swiss-Prot]
    • Organism: Escherichia coli
    Length: 304 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKATSEELAI FVSVVESGSF SRAAEQLGQA NSAVSRAVKK LEMKLGVSLL NRTTRQLSLT  60
   61 EEGERYFRRV QSILQEMAAA ESEIMETRNT PRGLLRIDAA TPVVLHFLMP LIKPFRERYP 120
  121 EVTLSLVSSE TIINLIERKV DVAIRAGTLT DSSLRARPLF NSYRKIIASP DYISRYGKPE 180
  181 TIDDLKQHIC LGFTEPASLN TWPIARSDGQ LHEVKYGLSS NSGETLKQLC LSGNGIACLS 240
  241 DYMIDKEIAR GELVELMADK VLPVEMPFSA VYYSDRAVST RIRAFIDFLS EHVKTAPGGA 300
  301 VREA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..304] PSI-BLAST 42.39794 COFACTOR BINDING FRAGMENT OF CYSB FROM KLEBSIELLA AEROGENES

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • transcription regulator activity
    		•  2.06846313752146 bayes_pls_golite062009
  • transcription factor activity
    		•  1.54776226622667 bayes_pls_golite062009
  • DNA binding
    		•  1.53867658911479 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.45471488657915 bayes_pls_golite062009
  • binding
    		•  1.29220115989941 bayes_pls_golite062009
  • catalytic activity
    		•  1.04475291968158 bayes_pls_golite062009
  • protein binding
    		•  0.0639574144110515 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle